add r-discorhythm

2 files changed, 105 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..edccc1e2a933
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,44 @@
+pkgbase = r-discorhythm
+	pkgdesc = Interactive Workflow for Discovering Rhythmicity in Biological Data
+	pkgver = 1.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DiscoRhythm
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biocstyle
+	depends = r-broom
+	depends = r-data.table
+	depends = r-dplyr
+	depends = r-dt
+	depends = r-ggextra
+	depends = r-ggplot2
+	depends = r-gridextra
+	depends = r-heatmaply
+	depends = r-kableextra
+	depends = r-knitr
+	depends = r-magick
+	depends = r-matrixstats
+	depends = r-matrixtests
+	depends = r-metacycle
+	depends = r-plotly
+	depends = r-reshape2
+	depends = r-rmarkdown
+	depends = r-s4vectors
+	depends = r-shiny
+	depends = r-shinybs
+	depends = r-shinycssloaders
+	depends = r-shinydashboard
+	depends = r-shinyjs
+	depends = r-summarizedexperiment
+	depends = r-upsetr
+	depends = r-venndiagram
+	depends = r-viridis
+	depends = r-zip
+	depends = pandoc
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DiscoRhythm_1.12.0.tar.gz
+	sha256sums = bb2a9967cde8ccb29777600347bbc763ea15e0b184fc613db7bd4eca4a28a3d1
+
+pkgname = r-discorhythm
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0285d1941a3c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,61 @@
+# system requirements: To generate html reports pandoc(http://pandoc.org/installing.html) is required.
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DiscoRhythm
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Interactive Workflow for Discovering Rhythmicity in Biological Data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biocstyle
+  r-broom
+  r-data.table
+  r-dplyr
+  r-dt
+  r-ggextra
+  r-ggplot2
+  r-gridextra
+  r-heatmaply
+  r-kableextra
+  r-knitr
+  r-magick
+  r-matrixstats
+  r-matrixtests
+  r-metacycle
+  r-plotly
+  r-reshape2
+  r-rmarkdown
+  r-s4vectors
+  r-shiny
+  r-shinybs
+  r-shinycssloaders
+  r-shinydashboard
+  r-shinyjs
+  r-summarizedexperiment
+  r-upsetr
+  r-venndiagram
+  r-viridis
+  r-zip
+  pandoc
+)
+optdepends=(
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('bb2a9967cde8ccb29777600347bbc763ea15e0b184fc613db7bd4eca4a28a3d1')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: