diff options
| author | Lev Levitsky | 2015-07-04 02:04:30 +0300 |
|---|---|---|
| committer | Lev Levitsky | 2015-07-04 02:04:30 +0300 |
| commit | 5eef9be8f35653f084c77ee06fcd3c61bbd5c170 (patch) | |
| tree | dcf1eebfebf5f8150f0f7ccaad0afbc7d5dad5d9 | |
| download | aur-5eef9be8f35653f084c77ee06fcd3c61bbd5c170.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 24 | ||||
| -rw-r--r-- | msgf+ | 2 | ||||
| -rw-r--r-- | mzid2tsv | 2 |
4 files changed, 45 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..6d0a1b2db283 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = msgfplus + pkgdesc = MS/MS database search tool + pkgver = 9979 + pkgrel = 1 + url = https://bix-lab.ucsd.edu/pages/viewpage.action?pageId=13533355 + arch = any + license = custom + depends = java-runtime + source = http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.zip + source = msgf+ + source = mzid2tsv + md5sums = 938cca2139fdbb3e678f0c4e5971950d + md5sums = c43c6581b373266171c3930c3718eb9c + md5sums = c860b9c30b74dae43de2d3933a405ac1 + +pkgname = msgfplus + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..40c62f4eb2f2 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,24 @@ +# Maintainer: Lev Levitsky <levlev@mail.ru> +pkgname=msgfplus +pkgver=9979 +pkgrel=1 +pkgdesc="MS/MS database search tool" +arch=('any') +url="https://bix-lab.ucsd.edu/pages/viewpage.action?pageId=13533355" +license=('custom') +depends=('java-runtime') +source=("http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.zip" + "msgf+" + "mzid2tsv") +md5sums=('938cca2139fdbb3e678f0c4e5971950d' + 'c43c6581b373266171c3930c3718eb9c' + 'c860b9c30b74dae43de2d3933a405ac1') + +package() { + cd "$srcdir" + install -D MSGFPlus.jar "${pkgdir}/usr/share/java/${pkgname}/MSGFPlus.jar" + install -D LICENSE.txt "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE.txt" + install -D Mods.txt "${pkgdir}/usr/share/${pkgname}/Mods.txt" + install -D msgf+ "${pkgdir}/usr/bin/msgf+" + install -D mzid2tsv "${pkgdir}/usr/bin/mzid2tsv" +} diff --git a/msgf+ b/msgf+ new file mode 100644 index 000000000000..6b12d6880c77 --- /dev/null +++ b/msgf+ @@ -0,0 +1,2 @@ +#!/bin/sh +exec /usr/bin/java -jar '/usr/share/java/msgfplus/MSGFPlus.jar' "$@"
\ No newline at end of file diff --git a/mzid2tsv b/mzid2tsv new file mode 100644 index 000000000000..43d0ab5b1966 --- /dev/null +++ b/mzid2tsv @@ -0,0 +1,2 @@ +#!/bin/sh +exec /usr/bin/java -cp '/usr/share/java/msgfplus/MSGFPlus.jar' "edu.ucsd.msjava.ui.MzIDToTsv" "$@"
\ No newline at end of file |