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author | Sukanka | 2022-06-06 01:25:49 +0800 |
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committer | Sukanka | 2022-06-06 01:25:49 +0800 |
commit | 61ea415a7052f09b2d888fd04b3dcc5342cd79ca (patch) | |
tree | e29dca75b23b1f8dcb0060b425f46c5f9cf5e283 | |
download | aur-61ea415a7052f09b2d888fd04b3dcc5342cd79ca.tar.gz |
add r-allelicimbalance
-rw-r--r-- | .SRCINFO | 36 | ||||
-rw-r--r-- | PKGBUILD | 52 |
2 files changed, 88 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..ee97047ee2fd --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,36 @@ +pkgbase = r-allelicimbalance + pkgdesc = Investigates Allele Specific Expression + pkgver = 1.34.0 + pkgrel = 1 + url = https://bioconductor.org/packages/AllelicImbalance + arch = any + license = GPL + depends = r + depends = r-annotationdbi + depends = r-biocgenerics + depends = r-biostrings + depends = r-bsgenome + depends = r-genomeinfodb + depends = r-genomicalignments + depends = r-genomicfeatures + depends = r-genomicranges + depends = r-gridextra + depends = r-gviz + depends = r-iranges + depends = r-latticeextra + depends = r-rsamtools + depends = r-s4vectors + depends = r-seqinr + depends = r-summarizedexperiment + depends = r-variantannotation + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-org.hs.eg.db + optdepends = r-rmarkdown + optdepends = r-snplocs.hsapiens.dbsnp144.grch37 + optdepends = r-testthat + optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene + source = https://bioconductor.org/packages/release/bioc/src/contrib/AllelicImbalance_1.34.0.tar.gz + sha256sums = 5fd4b8c0463924f48128dd4e1b5f2ee8410ad57d91e297e15aa7f3f93b689d70 + +pkgname = r-allelicimbalance diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..f6f29f38bf87 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,52 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=AllelicImbalance +_pkgver=1.34.0 +pkgname=r-${_pkgname,,} +pkgver=1.34.0 +pkgrel=1 +pkgdesc='Investigates Allele Specific Expression' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-annotationdbi + r-biocgenerics + r-biostrings + r-bsgenome + r-genomeinfodb + r-genomicalignments + r-genomicfeatures + r-genomicranges + r-gridextra + r-gviz + r-iranges + r-latticeextra + r-rsamtools + r-s4vectors + r-seqinr + r-summarizedexperiment + r-variantannotation +) +optdepends=( + r-biocstyle + r-knitr + r-org.hs.eg.db + r-rmarkdown + r-snplocs.hsapiens.dbsnp144.grch37 + r-testthat + r-txdb.hsapiens.ucsc.hg19.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('5fd4b8c0463924f48128dd4e1b5f2ee8410ad57d91e297e15aa7f3f93b689d70') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |