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| author | Grey Christoforo | 2020-11-01 16:29:54 +0100 |
|---|---|---|
| committer | Grey Christoforo | 2020-11-01 16:29:54 +0100 |
| commit | 67eaf3b7b937d99c7730f9c7b099027f37595935 (patch) | |
| tree | b0b46e8020f7549d96131d9dd8ad1e7ff89230f7 | |
| parent | 69aa31526a63b5d700e389ea20672f14467049b7 (diff) | |
| download | aur-67eaf3b7b937d99c7730f9c7b099027f37595935.tar.gz | |
bump version
| -rw-r--r-- | .SRCINFO | 6 | ||||
| -rw-r--r-- | PKGBUILD | 19 |
2 files changed, 13 insertions, 12 deletions
@@ -1,14 +1,14 @@ pkgbase = bowtie2 pkgdesc = Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. - pkgver = 2.3.5.1 + pkgver = 2.4.2 pkgrel = 1 url = http://bowtie-bio.sourceforge.net/bowtie2 arch = any license = GPL3 depends = termcap optdepends = intel-tbb: faster multithreading - source = https://github.com/BenLangmead/bowtie2/archive/v2.3.5.1.tar.gz - md5sums = 8afc22b107667ebe2d5b17f49dd37b4a + source = https://github.com/BenLangmead/bowtie2/archive/v2.4.2.tar.gz + md5sums = d5f8674aed8bdbf6b96bd07f3df528ee pkgname = bowtie2 @@ -2,16 +2,16 @@ # Maintainer: Grey Christoforo <first name [at] last name [dot] net> pkgname=bowtie2 -pkgver=2.3.5.1 +pkgver=2.4.2 pkgrel=1 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." arch=("any") depends=('termcap') optdepends=('intel-tbb: faster multithreading') url="http://bowtie-bio.sourceforge.net/bowtie2" -license=('GPL3') -source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz") -md5sums=('8afc22b107667ebe2d5b17f49dd37b4a') +license=(GPL3) +source=("https://github.com/BenLangmead/bowtie2/archive/v${pkgver}.tar.gz") +md5sums=('d5f8674aed8bdbf6b96bd07f3df528ee') prepare() { cd "${srcdir}/${pkgname}-${pkgver}" @@ -19,7 +19,7 @@ prepare() { } build() { - cd "${srcdir}/${pkgname}-${pkgver}" + cd "bowtie2-${pkgver}" if pacman -Q intel-tbb > /dev/null 2>/dev/null; then msg2 "Building with Intel's TBB multithreading support" EXTRA_FLAGS="-std=gnu++98" NO_TBB=0 make prefix=/usr @@ -31,9 +31,10 @@ build() { package() { mkdir -p "${pkgdir}/opt/" - cp -a "${srcdir}/${pkgname}-${pkgver}" "${pkgdir}/opt/${pkgname}" - cd "${srcdir}/${pkgname}-${pkgver}" + cp -a "${srcdir}/bowtie2-${pkgver}" "${pkgdir}/opt/bowtie2" + cd "${srcdir}/bowtie2-${pkgver}" make prefix=/usr DESTDIR="${pkgdir}" install - install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}" - install -Dm644 ${srcdir}/${pkgname}-${pkgver}/LICENSE -t "$pkgdir/usr/share/licenses/${pkgname}" + mkdir -p "${pkgdir}/usr/share/doc/bowtie2" + cp -a ${srcdir}/bowtie2-${pkgver}/doc "${pkgdir}/usr/share/doc/bowtie2" + install -Dm644 ${srcdir}/bowtie2-${pkgver}/LICENSE -t "${pkgdir}/usr/share/licenses/bowtie2" } |