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| author | Sukanka | 2022-06-06 06:45:30 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 06:45:30 +0800 |
| commit | 79069ca490969d168a1224ba55d11806f5ad36cc (patch) | |
| tree | db3349895c1ea6cdafe013010c244cdb70f077b0 | |
| download | aur-79069ca490969d168a1224ba55d11806f5ad36cc.tar.gz | |
add r-cnvpanelizer
| -rw-r--r-- | .SRCINFO | 33 | ||||
| -rw-r--r-- | PKGBUILD | 49 |
2 files changed, 82 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..0f17d2ea45a3 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,33 @@ +pkgbase = r-cnvpanelizer + pkgdesc = Reliable CNV detection in targeted sequencing applications + pkgver = 1.28.0 + pkgrel = 1 + url = https://bioconductor.org/packages/CNVPanelizer + arch = any + license = GPL + depends = r + depends = r-biocgenerics + depends = r-exomecopy + depends = r-foreach + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-ggplot2 + depends = r-gplots + depends = r-iranges + depends = r-noiseq + depends = r-openxlsx + depends = r-plyr + depends = r-reshape2 + depends = r-rsamtools + depends = r-s4vectors + depends = r-shiny + depends = r-shinyfiles + depends = r-shinyjs + depends = r-stringr + depends = r-testthat + optdepends = r-knitr + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/CNVPanelizer_1.28.0.tar.gz + sha256sums = 4911b81e576fceb3202fd62676056ba944e79660d6882aecb262e81680cbfab4 + +pkgname = r-cnvpanelizer diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..30116fe2ba12 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,49 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=CNVPanelizer +_pkgver=1.28.0 +pkgname=r-${_pkgname,,} +pkgver=1.28.0 +pkgrel=1 +pkgdesc='Reliable CNV detection in targeted sequencing applications' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-exomecopy + r-foreach + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-gplots + r-iranges + r-noiseq + r-openxlsx + r-plyr + r-reshape2 + r-rsamtools + r-s4vectors + r-shiny + r-shinyfiles + r-shinyjs + r-stringr + r-testthat +) +optdepends=( + r-knitr + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('4911b81e576fceb3202fd62676056ba944e79660d6882aecb262e81680cbfab4') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |