Fix for hardening wrapper

2 files changed, 54 insertions, 51 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 3df5e8c6a338..3a71a805dc35 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,8 @@
+# Generated by mksrcinfo v8
+# Thu Sep  8 18:46:29 UTC 2016
 pkgbase = percolator-git
 	pkgdesc = Software for postprocessing of shotgun proteomics data + format converters + Elude tool
-	pkgver = 2.10.r3.ga08619d
+	pkgver = 3.00.r3.g5fda027
 	pkgrel = 1
 	url = http://per-colator.com/
 	arch = x86_64
diff --git a/PKGBUILD b/PKGBUILD
index aa8f7b8b6bc2..4253a649bb8c 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,7 +1,7 @@
 # Maintainer: Lev Levitsky <levlev@mail.ru>
 pkgbase="percolator-git"
 pkgname=('percolator-git' 'percolator-converters-git' 'elude-git')
-pkgver=2.10.r3.ga08619d
+pkgver=3.00.r3.g5fda027
 pkgrel=1
 pkgdesc="Software for postprocessing of shotgun proteomics data + format converters + Elude tool"
 url="http://per-colator.com/"
@@ -10,71 +10,72 @@ depends=('xerces-c' 'sqlite')
 arch=('x86_64')
 makedepends=('git' 'xsd' 'cmake' 'boost' 'zlib')
 source=('source::git+https://github.com/percolator/percolator'
-		'percolator.patch')
+        'percolator.patch')
 md5sums=('SKIP'
-		 '4e1432640f09fa3dc2f3d9894ec380f4')
+         '4e1432640f09fa3dc2f3d9894ec380f4')
 
 pkgver() {
-	cd "${srcdir}/source"
+    cd "${srcdir}/source"
     git describe --match='rel*' --tags | sed 's/\([^-]*-g\)/r\1/;s/rel-//;s/-/./g'
 }
 
 prepare() {
-	cd "${srcdir}/source"
-	patch -p1 -i "$srcdir/${pkgname%-git}.patch"
-	cd "$BUILDDIR"
-	for d in "${pkgname[@]}"; do
-		mkdir "${d%-git}"
-	done
+    cd "${srcdir}/source"
+    patch -p1 -i "$srcdir/${pkgname%-git}.patch"
+    cd "$BUILDDIR"
+    for d in "${pkgname[@]}"; do
+        mkdir "${d%-git}"
+    done
 }
 
 build() {
-	cd "$BUILDDIR/${pkgname[0]%-git}"
-	echo "------------------------"
-	echo "Building percolator ..."
-	echo "------------------------"
-	cmake -DTARGET_ARCH=amd64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr -DXML_SUPPORT=ON "${srcdir}/source"
-	make
-	echo "------------------------"
-	echo "Building converters ..."
-	echo "------------------------"
-	cd "../${pkgname[1]%-git}"
-	cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/converters"
-	make
-	echo "------------------------"
-	echo "Building Elude ..."
-	echo "------------------------"
-	cd "../${pkgname[2]%-git}"
-	cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/elude_tool"
-	make
+    export HARDENING_PIE=0
+    cd "$BUILDDIR/${pkgname[0]%-git}"
+    echo "------------------------"
+    echo "Building percolator ..."
+    echo "------------------------"
+    cmake -DTARGET_ARCH=amd64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr -DXML_SUPPORT=ON "${srcdir}/source"
+    make
+    echo "------------------------"
+    echo "Building converters ..."
+    echo "------------------------"
+    cd "../${pkgname[1]%-git}"
+    cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/converters"
+    make
+    echo "------------------------"
+    echo "Building Elude ..."
+    echo "------------------------"
+    cd "../${pkgname[2]%-git}"
+    cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/elude_tool"
+    make
 }
 
 package_percolator-git() {
-	pkgdesc="Percolator and qvality, two post processors for shotgun proteomics data."
-	name="${pkgname[0]%-git}"
-	provides=("$name")
-	conflicts=("$name")
-	
-	cd "$BUILDDIR/$name"
-	make DESTDIR="$pkgdir/" install
+    pkgdesc="Percolator and qvality, two post processors for shotgun proteomics data."
+    name="${pkgname[0]%-git}"
+    provides=("$name")
+    conflicts=("$name")
+
+    cd "$BUILDDIR/$name"
+    make DESTDIR="$pkgdir/" install
 }
 
 package_percolator-converters-git() {
-	pkgdesc="Parsers of different database search engines to percolator input format."
-	name="${pkgname[1]%-git}"
-	provides=("$name")
-	conflicts=("$name")
-	
-	cd "$BUILDDIR/$name"
-	make DESTDIR="$pkgdir/" install
+    pkgdesc="Parsers of different database search engines to percolator input format."
+    name="${pkgname[1]%-git}"
+    provides=("$name")
+    conflicts=("$name")
+
+    cd "$BUILDDIR/$name"
+    make DESTDIR="$pkgdir/" install
 }
 
 package_elude-git() {
-	pkgdesc="Software package for prediction of retention times in mass spectorometry experiments."
-	name="${pkgname[2]%-git}"
-	provides=("$name")
-	conflicts=("$name")
-	
-	cd "$BUILDDIR/$name"
-	make DESTDIR="$pkgdir/" install
-}
\ No newline at end of file
+    pkgdesc="Software package for prediction of retention times in mass spectorometry experiments."
+    name="${pkgname[2]%-git}"
+    provides=("$name")
+    conflicts=("$name")
+
+    cd "$BUILDDIR/$name"
+    make DESTDIR="$pkgdir/" install
+}