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author | a821 | 2021-12-26 11:24:56 +0100 |
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committer | a821 | 2021-12-26 11:24:56 +0100 |
commit | 8f9b1770ae638de398f55ac78764c39aa7600dc8 (patch) | |
tree | d611e98efdc2a593d7bfcf530b4eb4278fb87249 | |
parent | f480efc70a61b923e9ac067605c03b3743232d1f (diff) | |
download | aur-8f9b1770ae638de398f55ac78764c39aa7600dc8.tar.gz |
Version 1.3.1
-rw-r--r-- | .SRCINFO | 17 | ||||
-rw-r--r-- | PKGBUILD | 38 | ||||
-rw-r--r-- | makefile_uname.patch | 11 |
3 files changed, 22 insertions, 44 deletions
@@ -1,15 +1,14 @@ pkgbase = bowtie - pkgdesc = Bowtie is an alignment tool for short nucleotide sequences against long templates - pkgver = 1.2.3 + pkgdesc = Alignment tool for short nucleotide sequences against long templates + pkgver = 1.3.1 pkgrel = 1 - url = http://bowtie-bio.sf.net + url = https://bowtie-bio.sf.net arch = x86_64 arch = i686 - license = PerlArtistic - source = https://github.com/BenLangmead/bowtie/archive/v1.2.3.tar.gz - source = makefile_uname.patch - sha256sums = 86402114caeacbb3a3030509cb59f0b7e96361c7b3ee2dd50e2cd68200898823 - sha256sums = 6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3 + license = Artistic2.0 + depends = python + depends = perl + source = bowtie-1.3.1.tar.gz::https://github.com/BenLangmead/bowtie/archive/v1.3.1.tar.gz + sha256sums = 147d9fe9652f7c5f351bfc0eb012e06981986fb43bd6bdfe88a95c02eabc6573 pkgname = bowtie - @@ -1,39 +1,29 @@ -# Maintainer: Athemis <alexander.minges[at]googlemail[dot]com> +# Maintainer: a821 +# Contributor: Athemis <alexander.minges[at]googlemail[dot]com> # Contributor: sauliusl + pkgname=bowtie -pkgver=1.2.3 +pkgver=1.3.1 pkgrel=1 -pkgdesc="Bowtie is an alignment tool for short nucleotide sequences against long templates" -url="http://bowtie-bio.sf.net" +pkgdesc="Alignment tool for short nucleotide sequences against long templates" +url="https://bowtie-bio.sf.net" arch=('x86_64' 'i686') -license=('PerlArtistic') -depends=() -source=("https://github.com/BenLangmead/bowtie/archive/v${pkgver}.tar.gz" - "makefile_uname.patch") -sha256sums=('86402114caeacbb3a3030509cb59f0b7e96361c7b3ee2dd50e2cd68200898823' - '6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3') - -prepare() { - cd "${srcdir}/${pkgname}-${pkgver}" - patch -Np0 -i ../makefile_uname.patch -} +license=('Artistic2.0') +depends=('python' 'perl') +source=("${pkgname}-${pkgver}.tar.gz::https://github.com/BenLangmead/bowtie/archive/v${pkgver}.tar.gz") +sha256sums=('147d9fe9652f7c5f351bfc0eb012e06981986fb43bd6bdfe88a95c02eabc6573') build() { cd "${srcdir}/${pkgname}-${pkgver}" - make NO_TBB=1 EXTRA_CXXFLAGS="-std=c++03" + make } package() { cd "${srcdir}/${pkgname}-${pkgver}" make prefix=/usr DESTDIR="${pkgdir}" install - install -d ${pkgdir}/usr/share/doc/${pkgname} - install -Dm755 scripts/*.pl "${pkgdir}/usr/bin" - install -Dm755 scripts/*.sh "${pkgdir}/usr/bin" - find doc -type f -exec install -Dm644 "{}" "${pkgdir}/usr/share/doc/${pkgname}" \; - install -Dm644 TUTORIAL "${pkgdir}/usr/share/doc/$pkgname/TUTORIAL" - install -Dm644 MANUAL "$pkgdir/usr/share/doc/$pkgname/MANUAL" - install -Dm644 MANUAL.markdown "$pkgdir/usr/share/doc/$pkgname/MANUAL.markdown" - install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" + + install -Dm755 -t "${pkgdir}/usr/share/${pkgname}/scripts/" scripts/*.{pl,sh} + install -Dm644 -t "${pkgdir}/usr/share/doc/$pkgname/" MANUAL{,.markdown} TUTORIAL AUTHORS NEWS } # vim:set ts=2 sw=2 et: diff --git a/makefile_uname.patch b/makefile_uname.patch deleted file mode 100644 index b9833cd6d4db..000000000000 --- a/makefile_uname.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- Makefile 2013-04-18 21:33:44.000000000 +0200 -+++ Makefile 2013-06-26 16:25:17.622402991 +0200 -@@ -107,7 +107,7 @@ - endif - - ifeq (1,$(LINUX)) -- ifeq (x86_64, $(shell uname -p)) -+ ifeq (x86_64, $(shell uname -m)) - BITS=64 - endif - endif |