add r-cner

2 files changed, 98 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..160c751fd11b
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,41 @@
+pkgbase = r-cner
+	pkgdesc = CNE Detection and Visualization
+	pkgver = 1.32.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/CNEr
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-annotate
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-dbi
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-go.db
+	depends = r-iranges
+	depends = r-keggrest
+	depends = r-powerlaw
+	depends = r-r.utils
+	depends = r-readr
+	depends = r-reshape2
+	depends = r-rsqlite
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-xvector
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.drerio.ucsc.danrer10
+	optdepends = r-bsgenome.ggallus.ucsc.galgal3
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-gviz
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-txdb.drerio.ucsc.danrer10.refgene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/CNEr_1.32.0.tar.gz
+	sha256sums = 780a43bba1307625b1bf395c20a22002b7338ea3796f2e20eef95ab45dc9fb17
+
+pkgname = r-cner
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1cf0984101ce
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,57 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=CNEr
+_pkgver=1.32.0
+pkgname=r-${_pkgname,,}
+pkgver=1.32.0
+pkgrel=1
+pkgdesc='CNE Detection and Visualization'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotate
+  r-biocgenerics
+  r-biostrings
+  r-dbi
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-ggplot2
+  r-go.db
+  r-iranges
+  r-keggrest
+  r-powerlaw
+  r-r.utils
+  r-readr
+  r-reshape2
+  r-rsqlite
+  r-rtracklayer
+  r-s4vectors
+  r-xvector
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.drerio.ucsc.danrer10
+  r-bsgenome.ggallus.ucsc.galgal3
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-gviz
+  r-knitr
+  r-rmarkdown
+  r-testthat
+  r-txdb.drerio.ucsc.danrer10.refgene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('780a43bba1307625b1bf395c20a22002b7338ea3796f2e20eef95ab45dc9fb17')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: