add r-scgps

2 files changed, 109 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d7498822c496
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,46 @@
+pkgbase = r-scgps
+	pkgdesc = A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)
+	pkgver = 1.10.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scGPS
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-caret
+	depends = r-deseq2
+	depends = r-dplyr
+	depends = r-dynamictreecut
+	depends = r-fastcluster
+	depends = r-ggplot2
+	depends = r-glmnet
+	depends = r-locfit
+	depends = r-rcpp
+	depends = r-rcpparmadillo
+	depends = r-rcppparallel
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = make
+	optdepends = r-biocparallel
+	optdepends = r-clusterprofiler
+	optdepends = r-cowplot
+	optdepends = r-dendextend
+	optdepends = r-devtools
+	optdepends = r-dose
+	optdepends = r-e1071
+	optdepends = r-knitr
+	optdepends = r-matrix
+	optdepends = r-networkd3
+	optdepends = r-org.hs.eg.db
+	optdepends = r-parallel
+	optdepends = r-rcolorbrewer
+	optdepends = r-reactomepa
+	optdepends = r-reshape2
+	optdepends = r-rmarkdown
+	optdepends = r-rtsne
+	optdepends = r-testthat
+	optdepends = r-wgcna
+	optdepends = r-xlsx
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scGPS_1.10.0.tar.gz
+	sha256sums = 7f537f1ce15b67dcb9a8eabeb60f36c655158c087d036a8900f4452ffaf1b57c
+
+pkgname = r-scgps
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d657d71f9a49
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,63 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scGPS
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-caret
+  r-deseq2
+  r-dplyr
+  r-dynamictreecut
+  r-fastcluster
+  r-ggplot2
+  r-glmnet
+  r-locfit
+  r-rcpp
+  r-rcpparmadillo
+  r-rcppparallel
+  r-singlecellexperiment
+  r-summarizedexperiment
+  make
+)
+optdepends=(
+  r-biocparallel
+  r-clusterprofiler
+  r-cowplot
+  r-dendextend
+  r-devtools
+  r-dose
+  r-e1071
+  r-knitr
+  r-matrix
+  r-networkd3
+  r-org.hs.eg.db
+  r-parallel
+  r-rcolorbrewer
+  r-reactomepa
+  r-reshape2
+  r-rmarkdown
+  r-rtsne
+  r-testthat
+  r-wgcna
+  r-xlsx
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('7f537f1ce15b67dcb9a8eabeb60f36c655158c087d036a8900f4452ffaf1b57c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: