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| author | Sukanka | 2022-06-06 17:48:05 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 17:48:05 +0800 |
| commit | ae6737b9e9b3e55ac14c468049ffcad8087fc0e4 (patch) | |
| tree | 6d8d37404e34e9afa6d0e9513a6e3d1a5e2d3912 | |
| download | aur-ae6737b9e9b3e55ac14c468049ffcad8087fc0e4.tar.gz | |
add r-packfinder
| -rw-r--r-- | .SRCINFO | 26 | ||||
| -rw-r--r-- | PKGBUILD | 42 |
2 files changed, 68 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..eec0eea1377d --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,26 @@ +pkgbase = r-packfinder + pkgdesc = de novo Annotation of Pack-TYPE Transposable Elements + pkgver = 1.8.0 + pkgrel = 1 + url = https://bioconductor.org/packages/packFinder + arch = any + license = GPL + depends = r + depends = r-ape + depends = r-biostrings + depends = r-genomicranges + depends = r-iranges + depends = r-kmer + depends = r-s4vectors + optdepends = r-bioccheck + optdepends = r-biocstyle + optdepends = r-biocviews + optdepends = r-biomartr + optdepends = r-dendextend + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/packFinder_1.8.0.tar.gz + sha256sums = f8e994f58d306a3132b7d81316bddb0cd50c098daa96f8eff5e1a0ce11e49b6b + +pkgname = r-packfinder diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..6551e0dd32f3 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,42 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=packFinder +_pkgver=1.8.0 +pkgname=r-${_pkgname,,} +pkgver=1.8.0 +pkgrel=1 +pkgdesc='de novo Annotation of Pack-TYPE Transposable Elements' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-ape + r-biostrings + r-genomicranges + r-iranges + r-kmer + r-s4vectors +) +optdepends=( + r-bioccheck + r-biocstyle + r-biocviews + r-biomartr + r-dendextend + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('f8e994f58d306a3132b7d81316bddb0cd50c098daa96f8eff5e1a0ce11e49b6b') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |