diff options
author | Lev Levitsky | 2022-11-06 15:56:38 +0100 |
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committer | Lev Levitsky | 2022-11-06 15:56:38 +0100 |
commit | af6681eaee1f779c8319749d6b9d4fcd9501ec96 (patch) | |
tree | 1b215791cbbe0d8e6019ada101fb060e251226bd | |
parent | 4c26c3c1eac5bcb573a59914d0dec727ef225949 (diff) | |
download | aur-af6681eaee1f779c8319749d6b9d4fcd9501ec96.tar.gz |
v4.5.6
-rw-r--r-- | .SRCINFO | 6 | ||||
-rw-r--r-- | CHANGELOG | 15 | ||||
-rw-r--r-- | PKGBUILD | 4 |
3 files changed, 19 insertions, 6 deletions
@@ -1,6 +1,6 @@ pkgbase = python-pyteomics pkgdesc = A framework for proteomics data analysis. - pkgver = 4.5.5 + pkgver = 4.5.6 pkgrel = 1 url = https://pyteomics.readthedocs.io changelog = CHANGELOG @@ -16,7 +16,7 @@ pkgbase = python-pyteomics optdepends = python-dill: needed for multiprocessing when pickle is not enough optdepends = python-pynumpress: for Numpress support options = !emptydirs - source = https://pypi.debian.net/pyteomics/pyteomics-4.5.5-py2.py3-none-any.whl - sha256sums = 4ac9be43cf1dec258ef2803f44c537a1fbc6c2817cbea6c2b15ec3ca6038ae70 + source = https://pypi.debian.net/pyteomics/pyteomics-4.5.6-py2.py3-none-any.whl + sha256sums = 0e279c085370e8085c84997adb8f9e16425facf2d088ba80f2b7e6bcb59cfebe pkgname = python-pyteomics diff --git a/CHANGELOG b/CHANGELOG index e5743c0cd048..b9483672c03b 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,3 +1,16 @@ +4.5.6 +----- + + - New function :py:func:`pyteomics.proforma.set_unimod_path` allowing the ProForma parsing machinery + to work with a local Unimod copy (`#85 <https://github.com/levitsky/pyteomics/pull/85>`_ by Joshua Klein). + See `documentation <https://pyteomics.readthedocs.io/en/latest/api/proforma.html#cv-disk-caching>`_ for a usage example. + - New method :py:meth:`pyteomics.proforma.Proforma.fragments` to generate m/z for an ion series + (`#85 <https://github.com/levitsky/pyteomics/pull/85>`_ by Joshua Klein). + - New function :py:func:`pyteomics.parser.to_proforma` helps convert *modX* sequences to ProForma. + - Fix: prevent :func:`pyteomics.mass.mass.fast_mass2` from changing `aa_mass`. + - Update :py:func:`pyteomics.pylab_aux.annotate_spectrum` for compatibility with latest :py:mod:`spectrum_utils`. + Pyteomics is now compatible with :py:mod:`spectrum_utils` 0.4.0 and newer. + 4.5.5 ----- @@ -17,7 +30,7 @@ - Fix ThreadPool shutdown and add new parameter `ephemeral_pool` in :py:class:`pyteomics.usi.PROXIAggregator` (`#67 <https://github.com/levitsky/pyteomics/pull/67>`_ by Joshua Klein). - - Bugfix in `pyteomics.proforma.GenericModificationResolver` (`#68 <https://github.com/levitsky/pyteomics/issues/68>`_) by Joshua Klein. + - Bugfix in `pyteomics.proforma.GenericModificationResolver` (`#68 <https://github.com/levitsky/pyteomics/issues/68>`_ by Joshua Klein). - New helper function :py:func:`pyteomics.fasta.decoy_entries`. - New arguments `charge_carrier`, `absolute` in :py:func:`mass.calculate_mass` and :py:meth:`mass.Composition.mass` (`#61 <https://github.com/levitsky/pyteomics/pull/61>`_). @@ -1,6 +1,6 @@ # Maintainer: Lev Levitsky <levlev at mail dot ru> pkgname=python-pyteomics -pkgver=4.5.5 +pkgver=4.5.6 pkgrel=1 pkgdesc="A framework for proteomics data analysis." arch=('any') @@ -16,7 +16,7 @@ optdepends=('python-matplotlib: for pylab_aux module' 'python-pynumpress: for Numpress support') options=(!emptydirs) source=("https://pypi.debian.net/pyteomics/pyteomics-${pkgver}-py2.py3-none-any.whl") -sha256sums=('4ac9be43cf1dec258ef2803f44c537a1fbc6c2817cbea6c2b15ec3ca6038ae70') +sha256sums=('0e279c085370e8085c84997adb8f9e16425facf2d088ba80f2b7e6bcb59cfebe') changelog=CHANGELOG package() { |