add r-phemd

2 files changed, 86 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e9e4fe0a6bca
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,35 @@
+pkgbase = r-phemd
+	pkgdesc = Phenotypic EMD for comparison of single-cell samples
+	pkgver = 1.10.0
+	pkgrel = 2
+	url = https://bioconductor.org/packages/phemd
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-cowplot
+	depends = r-destiny
+	depends = r-ggplot2
+	depends = r-igraph
+	depends = r-maptree
+	depends = r-monocle
+	depends = r-phater
+	depends = r-pheatmap
+	depends = r-pracma
+	depends = r-rann
+	depends = r-rcolorbrewer
+	depends = r-reticulate
+	depends = r-rtsne
+	depends = r-s4vectors
+	depends = r-scatterplot3d
+	depends = r-seurat
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-transport
+	depends = r-vgam
+	optdepends = r-knitr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/phemd_1.10.0.tar.gz
+	sha256sums = 5cfd9efc5bbfcf3629e4c0c7cfe7fd265340d55bf54c2e36bf0098d113df7dd8
+
+pkgname = r-phemd
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3019013c4ce0
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=phemd
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=2
+pkgdesc='Phenotypic EMD for comparison of single-cell samples'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-biocgenerics
+  r-cowplot
+  r-destiny
+  r-ggplot2
+  r-igraph
+  r-maptree
+  r-monocle
+  r-phater
+  r-pheatmap
+  r-pracma
+  r-rann
+  r-rcolorbrewer
+  r-reticulate
+  r-rtsne
+  r-s4vectors
+  r-scatterplot3d
+  r-seurat
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-transport
+  r-vgam
+)
+optdepends=(
+  r-knitr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5cfd9efc5bbfcf3629e4c0c7cfe7fd265340d55bf54c2e36bf0098d113df7dd8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: