1.2.4

3 files changed, 19 insertions, 15 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 015e24d1b0ad..0e7ab6b967d9 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
 pkgbase = wiggletools
 	pkgdesc = Compute genome-wide statistics with composable iterators
-	pkgver = 1.2.3
+	pkgver = 1.2.4
 	pkgrel = 1
 	url = https://github.com/Ensembl/WiggleTools
 	arch = i686
@@ -10,10 +10,10 @@ pkgbase = wiggletools
 	depends = htslib
 	depends = libbigwig
 	depends = python2
-	source = wiggletools-1.2.3.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v1.2.3.tar.gz
+	source = wiggletools-1.2.4.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v1.2.4.tar.gz
 	source = wiggletools-flags.patch
-	sha256sums = 2adc6c0f1738e604aa20a60b1c79ea36bc8cd030a2b6039b8e5ddc31c2bf846c
-	sha256sums = f04db62c23166bc49de9c9bd3d8e221011714b95059b1436bb9ec1d3902a7dcd
+	sha256sums = 3d21a107321aa0ab6c96a2dae585a61e8dfca566a8c18e15b677c05b3ec64ead
+	sha256sums = b945a520e71f9a9f4f62f7e737847990d9cde05d8f0ea5af75dfdd6155d3493e
 
 pkgname = wiggletools
 
diff --git a/PKGBUILD b/PKGBUILD
index 25f8da2880f1..2dae7707ce0b 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,8 +1,8 @@
-# Maintainer: Andrew Sun <adsun701@gmail.com>
-# Contributor: Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
+# Maintainer: Andrew Sun <adsun701 at gmail dot com>
+# Contributor: Christian Krause ("wookietreiber") <christian dot krause at mailbox dot org>
 
 pkgname=wiggletools
-pkgver=1.2.3
+pkgver=1.2.4
 pkgrel=1
 pkgdesc="Compute genome-wide statistics with composable iterators"
 arch=('i686' 'x86_64')
@@ -11,8 +11,8 @@ license=('Apache')
 depends=('gsl' 'htslib' 'libbigwig' 'python2')
 source=("${pkgname}-${pkgver}.tar.gz"::"https://github.com/Ensembl/WiggleTools/archive/v${pkgver}.tar.gz"
         "wiggletools-flags.patch")
-sha256sums=('2adc6c0f1738e604aa20a60b1c79ea36bc8cd030a2b6039b8e5ddc31c2bf846c'
-            'f04db62c23166bc49de9c9bd3d8e221011714b95059b1436bb9ec1d3902a7dcd')
+sha256sums=('3d21a107321aa0ab6c96a2dae585a61e8dfca566a8c18e15b677c05b3ec64ead'
+            'b945a520e71f9a9f4f62f7e737847990d9cde05d8f0ea5af75dfdd6155d3493e')
 
 prepare() {
   cd "${srcdir}/WiggleTools-${pkgver}"
diff --git a/wiggletools-flags.patch b/wiggletools-flags.patch
index 91c41594346c..e17029fb9b6f 100644
--- a/wiggletools-flags.patch
+++ b/wiggletools-flags.patch
@@ -1,15 +1,19 @@
-diff -Naur WiggleTools-1.2.3.orig/src/Makefile WiggleTools-1.2.3/src/Makefile
---- WiggleTools-1.2.3.orig/src/Makefile	2019-07-11 11:05:35.437719184 -0400
-+++ WiggleTools-1.2.3/src/Makefile	2019-07-11 11:12:48.112989668 -0400
-@@ -1,5 +1,6 @@
- CC=/bin/cc
+--- a/src/Makefile	2020-08-13 10:25:02.781495451 -0400
++++ b/src/Makefile	2020-08-13 10:29:03.068773044 -0400
+@@ -1,9 +1,10 @@
 -CFLAGS=-g -Wall -O3 -std=gnu99
 +CFLAGS+=-g -Wall -O3 -std=gnu99
 +LDFLAGS+=
  LIBDIR=../lib
  BINDIR=../bin
  INC=-I../../libBigWig -I../../htslib
-@@ -13,7 +14,7 @@
+ LIB_PATHS=-L${LIBDIR} -L../../libBigWig -L../../htslib
+-LIBS= -lwiggletools -l:libBigWig.a -lcurl -l:libhts.a -lgsl  -lgslcblas -lz -lpthread -lm -llzma -lbz2
++LIBS= -lwiggletools -lBigWig -lcurl -lhts -lgsl  -lgslcblas -lz -lpthread -lm -llzma -lbz2
+ OPTS=-D_PBGZF_USE
+ 
+ default: lib bin
+@@ -12,7 +13,7 @@
  
  ${BINDIR}/wiggletools: ${LIBDIR}/libwiggletools.a wiggletools.o
  	mkdir -p ${BINDIR}