add r-minfi

2 files changed, 114 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..74c0c6b6bfb8
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,49 @@
+pkgbase = r-minfi
+	pkgdesc = Analyze Illumina Infinium DNA methylation arrays
+	pkgver = 1.42.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/minfi
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-beanplot
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-bumphunter
+	depends = r-data.table
+	depends = r-delayedarray
+	depends = r-delayedmatrixstats
+	depends = r-genefilter
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-geoquery
+	depends = r-hdf5array
+	depends = r-illuminaio
+	depends = r-iranges
+	depends = r-limma
+	depends = r-mclust
+	depends = r-nor1mix
+	depends = r-preprocesscore
+	depends = r-quadprog
+	depends = r-rcolorbrewer
+	depends = r-reshape
+	depends = r-s4vectors
+	depends = r-siggenes
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-digest
+	optdepends = r-flowsorted.blood.450k
+	optdepends = r-illuminahumanmethylation450kanno.ilmn12.hg19
+	optdepends = r-illuminahumanmethylation450kmanifest
+	optdepends = r-knitr
+	optdepends = r-minfidata
+	optdepends = r-minfidataepic
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	optdepends = r-tools
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/minfi_1.42.0.tar.gz
+	sha256sums = 06e7596df31e8c01cd990f7f0dde3ef5e001cf58531ecb110f609658f8f9a508
+
+pkgname = r-minfi
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9b8ca308ed82
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,65 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=minfi
+_pkgver=1.42.0
+pkgname=r-${_pkgname,,}
+pkgver=1.42.0
+pkgrel=1
+pkgdesc='Analyze Illumina Infinium DNA methylation arrays'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-beanplot
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bumphunter
+  r-data.table
+  r-delayedarray
+  r-delayedmatrixstats
+  r-genefilter
+  r-genomeinfodb
+  r-genomicranges
+  r-geoquery
+  r-hdf5array
+  r-illuminaio
+  r-iranges
+  r-limma
+  r-mclust
+  r-nor1mix
+  r-preprocesscore
+  r-quadprog
+  r-rcolorbrewer
+  r-reshape
+  r-s4vectors
+  r-siggenes
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-digest
+  r-flowsorted.blood.450k
+  r-illuminahumanmethylation450kanno.ilmn12.hg19
+  r-illuminahumanmethylation450kmanifest
+  r-knitr
+  r-minfidata
+  r-minfidataepic
+  r-rmarkdown
+  r-runit
+  r-tools
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('06e7596df31e8c01cd990f7f0dde3ef5e001cf58531ecb110f609658f8f9a508')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: