add r-systempipeshiny

2 files changed, 152 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d590f555f2a8
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,68 @@
+pkgbase = r-systempipeshiny
+	pkgdesc = systemPipeShiny: An Interactive Framework for Workflow Management and Visualization
+	pkgver = 1.6.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/systemPipeShiny
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-assertthat
+	depends = r-bsplus
+	depends = r-crayon
+	depends = r-dplyr
+	depends = r-drawer
+	depends = r-dt
+	depends = r-ggplot2
+	depends = r-glue
+	depends = r-htmltools
+	depends = r-magrittr
+	depends = r-openssl
+	depends = r-plotly
+	depends = r-r6
+	depends = r-rlang
+	depends = r-rsqlite
+	depends = r-rstudioapi
+	depends = r-shiny
+	depends = r-shinyace
+	depends = r-shinydashboard
+	depends = r-shinydashboardplus
+	depends = r-shinyfiles
+	depends = r-shinyjqui
+	depends = r-shinyjs
+	depends = r-shinytoastr
+	depends = r-shinywidgets
+	depends = r-spscomps
+	depends = r-spsutil
+	depends = r-stringr
+	depends = r-styler
+	depends = r-tibble
+	depends = r-vroom
+	depends = r-yaml
+	optdepends = r-ape
+	optdepends = r-biocstyle
+	optdepends = r-callr
+	optdepends = r-cicerone
+	optdepends = r-deseq2
+	optdepends = r-esquisse
+	optdepends = r-fs
+	optdepends = r-glmpca
+	optdepends = r-grid
+	optdepends = r-knitr
+	optdepends = r-pheatmap
+	optdepends = r-pushbar
+	optdepends = r-r.utils
+	optdepends = r-readr
+	optdepends = r-rhandsontable
+	optdepends = r-rmarkdown
+	optdepends = r-rtsne
+	optdepends = r-summarizedexperiment
+	optdepends = r-systempiper
+	optdepends = r-systempiperdata
+	optdepends = r-testthat
+	optdepends = r-tidyr
+	optdepends = r-upsetr
+	optdepends = r-zip
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/systemPipeShiny_1.6.1.tar.gz
+	sha256sums = 56b2c4568ffb3d2c37e1c9c6d3a515e1b3287931b744c08070f7ce7afc4e1dac
+
+pkgname = r-systempipeshiny
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..eb8d8a915773
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,84 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=systemPipeShiny
+_pkgver=1.6.1
+pkgname=r-${_pkgname,,}
+pkgver=1.6.1
+pkgrel=1
+pkgdesc='systemPipeShiny: An Interactive Framework for Workflow Management and Visualization'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-assertthat
+  r-bsplus
+  r-crayon
+  r-dplyr
+  r-drawer
+  r-dt
+  r-ggplot2
+  r-glue
+  r-htmltools
+  r-magrittr
+  r-openssl
+  r-plotly
+  r-r6
+  r-rlang
+  r-rsqlite
+  r-rstudioapi
+  r-shiny
+  r-shinyace
+  r-shinydashboard
+  r-shinydashboardplus
+  r-shinyfiles
+  r-shinyjqui
+  r-shinyjs
+  r-shinytoastr
+  r-shinywidgets
+  r-spscomps
+  r-spsutil
+  r-stringr
+  r-styler
+  r-tibble
+  r-vroom
+  r-yaml
+)
+optdepends=(
+  r-ape
+  r-biocstyle
+  r-callr
+  r-cicerone
+  r-deseq2
+  r-esquisse
+  r-fs
+  r-glmpca
+  r-grid
+  r-knitr
+  r-pheatmap
+  r-pushbar
+  r-r.utils
+  r-readr
+  r-rhandsontable
+  r-rmarkdown
+  r-rtsne
+  r-summarizedexperiment
+  r-systempiper
+  r-systempiperdata
+  r-testthat
+  r-tidyr
+  r-upsetr
+  r-zip
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('56b2c4568ffb3d2c37e1c9c6d3a515e1b3287931b744c08070f7ce7afc4e1dac')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: