NRN-7.5-Build

1 files changed, 33 insertions, 12 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 6d9d9b2cd0d3..736cfa38277e 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -12,19 +12,40 @@ options=('!strip' '!emptydirs')
 source_x86_64=("http://neuron.yale.edu/ftp/neuron/versions/v7.5/nrn-7.5.x86_64.deb")
 sha512sums_x86_64=('a4ad3e5b8a3ad7e480476232b32155b03c9dd313c22480690a96da3bd039b8d106f41e1907cbe4acdf153af297b98a195204bb5e8df46b5f911dde7fda08f131')
 
-package(){
+build() {
+  cd "$srcdir/nrn-$pkgver"
 
-	# Extract package data
-	tar xf data.tar.xz -C "${pkgdir}"
+  # We do this so the python libraries actually get installed in the package prefix
+  sed -i "s_ac\_pysetup='--home=\$(prefix)'_ac\_pysetup='--home=$pkgdir/usr'_g" "$srcdir/nrn-$pkgver/configure"
+  sed -i 's_exec\_prefix="${prefix}/${host\_cpu}"_exec\_prefix="${prefix}"_g' "$srcdir/nrn-$pkgver/configure"
 
-	# Fix directories structure differencies
-	cd "${pkgdir}"
-
-	install -D -m644 "/usr/share/doc/neuron/copyright" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-	mkdir usr/bin 2> /dev/null; mv usr/local/bin/* usr/bin; rm -rf usr/local/bin
-
-	mv usr/local/* usr; rm -rf usr/local
-
-	cd ..
+  # Python 3 complains about a prototype (see http://www.neuron.yale.edu/phpbb/viewtopic.php?f=2&t=3060). 
+  # This part patches some code according to http://www.neuron.yale.edu/hg/neuron/nrn/rev/dce1de58303d.
+  patch -p1 < $srcdir/patch.diff
+	
+  ./configure --prefix=/usr --libdir=/usr/lib --bindir=/usr/bin --with-paranrn --with-nrnpython=`which python`
+  make 
+}
 
+package() {
+  cd "$srcdir/nrn-$pkgver"
+  DESTDIR="$pkgdir"
+  sed -i "s_package\_dir\ =\ {'':instdir+'/share/nrn/lib/python'}\,_package\_dir\ =\ {'':'$pkgdir/usr/share/nrn/lib/python'}\,_g" src/nrnpython/setup.py
+  make DESTDIR="$pkgdir" install
+  #rm -f "$pkgdir/usr/lib/libnrnmpi.la"
+  #rm -f "$pkgdir/usr/lib/libmeschach.la"
+  #rm -f "$pkgdir/usr/lib/libivoc.la"
+  #rm -f "$pkgdir/usr/lib/libscopmath.la"
+  #rm -f "$pkgdir/usr/lib/libneuron_gnu.la"
+  #rm -f "$pkgdir/usr/lib/libmemacs.la"
+  #rm -f "$pkgdir/usr/lib/libnrnoc.la"
+  #rm -f "$pkgdir/usr/lib/libnrnpython.la"
+  #rm -f "$pkgdir/usr/lib/liboc.la"
+  #rm -f "$pkgdir/usr/lib/libnrniv.la"
+  #rm -f "$pkgdir/usr/lib/libsundials.la"
+  #rm -f "$pkgdir/usr/lib/libsparse13.la"
+  #rm -f "$pkgdir/usr/lib/libocxt.la"
+  
+  cd "src/nrnpython/"
+  python setup.py install --root="$pkgdir/"
 }