diff options
author | Sukanka | 2022-06-06 07:43:10 +0800 |
---|---|---|
committer | Sukanka | 2022-06-06 07:43:10 +0800 |
commit | d423040f5442a2a351893c3bad23967621e0f7c1 (patch) | |
tree | a6a57a7fe9039fe52dec094e0aae0282cab1964b | |
download | aur-d423040f5442a2a351893c3bad23967621e0f7c1.tar.gz |
add r-dearseq
-rw-r--r-- | .SRCINFO | 38 | ||||
-rw-r--r-- | PKGBUILD | 54 |
2 files changed, 92 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..e39921b3a4f7 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,38 @@ +pkgbase = r-dearseq + pkgdesc = Differential Expression Analysis for RNA-seq data through a robust variance component test + pkgver = 1.8.1 + pkgrel = 1 + url = https://bioconductor.org/packages/dearseq + arch = any + license = GPL + depends = r + depends = r-ggplot2 + depends = r-matrixstats + depends = r-patchwork + depends = r-pbapply + depends = r-statmod + depends = r-survey + depends = r-viridislite + depends = r-compquadform + depends = r-reshape2 + depends = r-plyr + depends = r-dplyr + optdepends = r-biobase + optdepends = r-biocmanager + optdepends = r-biocset + optdepends = r-covr + optdepends = r-deseq2 + optdepends = r-edger + optdepends = r-geoquery + optdepends = r-gsa + optdepends = r-knitr + optdepends = r-limma + optdepends = r-readxl + optdepends = r-rmarkdown + optdepends = r-s4vectors + optdepends = r-summarizedexperiment + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/dearseq_1.8.1.tar.gz + sha256sums = 415e466e09d170fb67e87ca0c8e66a21cd1dabc83a2e4dadae8c32fdca2424b8 + +pkgname = r-dearseq diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..3957eb5a466a --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,54 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=dearseq +_pkgver=1.8.1 +pkgname=r-${_pkgname,,} +pkgver=1.8.1 +pkgrel=1 +pkgdesc='Differential Expression Analysis for RNA-seq data through a robust variance component test' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-ggplot2 + r-matrixstats + r-patchwork + r-pbapply + r-statmod + r-survey + r-viridislite + r-compquadform + r-reshape2 + r-plyr + r-dplyr +) +optdepends=( + r-biobase + r-biocmanager + r-biocset + r-covr + r-deseq2 + r-edger + r-geoquery + r-gsa + r-knitr + r-limma + r-readxl + r-rmarkdown + r-s4vectors + r-summarizedexperiment + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('415e466e09d170fb67e87ca0c8e66a21cd1dabc83a2e4dadae8c32fdca2424b8') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |