proovread-2.12-2

2 files changed, 15 insertions, 6 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 2cb6a6669c5e..32b8f2e0bf6b 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,9 +1,10 @@
 pkgbase = proovread
 	pkgdesc = large-scale high accuracy PacBio correction through iterative short read consensus
 	pkgver = 2.12
-	pkgrel = 1
+	pkgrel = 2
 	url = https://github.com/BioInf-Wuerzburg/proovread
-	arch = any
+	arch = i686
+	arch = x86_64
 	license = PerlArtistic
 	depends = blasr-git
 	depends = perl-log-log4perl
diff --git a/PKGBUILD b/PKGBUILD
index 93f5f1047980..aeca7ddef7ab 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,9 +2,9 @@
 
 pkgname=proovread
 pkgver=2.12
-pkgrel=1
+pkgrel=2
 pkgdesc="large-scale high accuracy PacBio correction through iterative short read consensus"
-arch=('any')
+arch=('i686' 'x86_64')
 url="https://github.com/BioInf-Wuerzburg/proovread"
 license=('PerlArtistic')
 depends=('blasr-git' 'perl-log-log4perl' 'blast+>=2.2.24' 'samtools>=1.1' 'shrimp')
@@ -16,6 +16,11 @@ prepare() {
 
   git submodule init
   git submodule update
+
+  sed -e "s|'bwa-path' => \$RealBin.'/../util/bwa/'|'bwa-path' => ''|" \
+      -e "s|'shrimp-path' => \$RealBin.'/../util/shrimp-2.2.3/'|'shrimp-path' => ''|" \
+      -e "s|'blasr-path' => \$RealBin.'/../util/blasr-1.3.1/'|'blasr-path' => ''|" \
+      -i proovread.cfg
 }
 
 build() {
@@ -28,11 +33,14 @@ package() {
   cd $srcdir/$pkgname
 
   mkdir -p $pkgdir/usr/bin \
-           $pkgdir/usr/lib/perl5/vendor_perl
+           $pkgdir/usr/lib/perl5/vendor_perl \
+           $pkgdir/usr/share/proovread
 
-  for file in bin/* util/SeqChunker/bin/* ; do
+  for file in bin/* util/SeqChunker/bin/* util/bwa/bwa-proovread ; do
     install -Dm755 $file $pkgdir/usr/bin/$(basename $file .pl)
   done
 
   cp -r lib/* $pkgdir/usr/lib/perl5/vendor_perl
+
+  install -Dm644 proovread.cfg $pkgdir/usr/share/proovread/proovread.cfg
 }