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| author | George Amanakis | 2018-11-14 22:40:20 -0500 |
|---|---|---|
| committer | George Amanakis | 2018-11-14 22:40:20 -0500 |
| commit | dfe8c8b8e10aacae05080e935cdd2ae78d68d8e3 (patch) | |
| tree | a65a8c0cbc057bacaac1a8af07650d51ecccbc2d | |
| parent | e4181a512dd73a4285da93de7e2a582bb1d148cf (diff) | |
| download | aur-dfe8c8b8e10aacae05080e935cdd2ae78d68d8e3.tar.gz | |
update to 2.9.3
| -rw-r--r-- | .SRCINFO | 6 | ||||
| -rw-r--r-- | PKGBUILD | 13 |
2 files changed, 9 insertions, 10 deletions
@@ -1,6 +1,6 @@ pkgbase = ngs pkgdesc = A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. - pkgver = 1.2.5 + pkgver = 2.9.3 pkgrel = 1 url = https://github.com/ncbi/ngs arch = x86_64 @@ -9,9 +9,9 @@ pkgbase = ngs depends = perl-file-copy-recursive depends = zlib provides = ngs - source = https://github.com/ncbi/ngs/archive/1.2.5.tar.gz + source = https://github.com/ncbi/ngs/archive/2.9.3.tar.gz source = ngs.patch - sha256sums = 2a32c30d1611f8ce68aba81e5b44369969c6d32bcebc37aa41be2cdbaa76c113 + sha256sums = d16cdf340f4c66e449cc490a222e54e9074cd15fe0938cb75b951a72985f757d sha256sums = 004eb006e9bbd9f4368c54663e7d991833aeae3e9c6583e61566340cd04d5bb6 pkgname = ngs @@ -2,7 +2,7 @@ # Maintainer: Aaron Baker <aa{last name}99{at}gmail{dt}org> pkgname=ngs -pkgver=1.2.5 +pkgver=2.9.3 pkgrel=1 pkgdesc="A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing." arch=('x86_64') @@ -11,7 +11,8 @@ depends=('java-environment' 'perl-file-copy-recursive' 'zlib') provides=('ngs') license=('custom:PublicDomain') source=("https://github.com/ncbi/ngs/archive/$pkgver.tar.gz" "$pkgname.patch") -sha256sums=('2a32c30d1611f8ce68aba81e5b44369969c6d32bcebc37aa41be2cdbaa76c113' '004eb006e9bbd9f4368c54663e7d991833aeae3e9c6583e61566340cd04d5bb6') +sha256sums=('d16cdf340f4c66e449cc490a222e54e9074cd15fe0938cb75b951a72985f757d' + '004eb006e9bbd9f4368c54663e7d991833aeae3e9c6583e61566340cd04d5bb6') prepare(){ cd "${pkgname}-${pkgver}" @@ -22,10 +23,7 @@ prepare(){ build(){ cd "${pkgname}-${pkgver}" - ./configure --prefix="$pkgdir/usr/" - cd "ngs-java" - ./configure --prefix="$pkgdir/usr/" - cd ".." + ./configure --prefix="$pkgdir/usr/" --build-prefix="$srcdir/build" make } @@ -38,7 +36,8 @@ package(){ cd "$pkgname-$pkgver" # ncbi does not use autoconf/automake so there is no respect for DESTDIR # but there is a ROOT(dir) - make "ROOT=$pkgdir" install + #make "ROOT=$pkgdir" install + make install # add license mkdir -p "$pkgdir/usr/share/licenses/${pkgname}" |