add r-fishpond

2 files changed, 85 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..97df7ba7a26f
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,34 @@
+pkgbase = r-fishpond
+	pkgdesc = Fishpond: differential transcript and gene expression with inferential replicates
+	pkgver = 2.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/fishpond
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-abind
+	depends = r-gtools
+	depends = r-jsonlite
+	depends = r-matrixstats
+	depends = r-qvalue
+	depends = r-rcpp
+	depends = r-s4vectors
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-svmisc
+	depends = gcc
+	optdepends = r-apeglm
+	optdepends = r-deseq2
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-macrophage
+	optdepends = r-org.hs.eg.db
+	optdepends = r-rmarkdown
+	optdepends = r-samr
+	optdepends = r-testthat
+	optdepends = r-tximeta
+	optdepends = r-tximportdata
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/fishpond_2.2.0.tar.gz
+	sha256sums = d56738efeffcf66485d7a28d2b9b82ecfbd4da872cbfe0fb5a1f660da027776b
+
+pkgname = r-fishpond
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d01d79c14b0f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=fishpond
+_pkgver=2.2.0
+pkgname=r-${_pkgname,,}
+pkgver=2.2.0
+pkgrel=1
+pkgdesc='Fishpond: differential transcript and gene expression with inferential replicates'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-abind
+  r-gtools
+  r-jsonlite
+  r-matrixstats
+  r-qvalue
+  r-rcpp
+  r-s4vectors
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-svmisc
+  gcc
+)
+optdepends=(
+  r-apeglm
+  r-deseq2
+  r-knitr
+  r-limma
+  r-macrophage
+  r-org.hs.eg.db
+  r-rmarkdown
+  r-samr
+  r-testthat
+  r-tximeta
+  r-tximportdata
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d56738efeffcf66485d7a28d2b9b82ecfbd4da872cbfe0fb5a1f660da027776b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: