Updated: PKGBUILD

3 files changed, 168 insertions, 163 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 55f942b05082..91b42fb75741 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,8 +1,8 @@
 pkgbase = jalview
 	pkgdesc = Bioinformatics Multiple Alignment Editor
 	pkgver = 2.11.0
-	pkgrel = 1
-	url = http://www.jalview.org/
+	pkgrel = 2
+	url = https://www.jalview.org/
 	arch = any
 	license = GPL3
 	depends = java-runtime
@@ -57,57 +57,57 @@ pkgbase = jalview
 	noextract = wsdl4j.jar
 	noextract = xercesImpl.jar
 	noextract = xml-apis.jar
-	source = http://www.jalview.org/webstart/jalview.jar
-	source = http://www.jalview.org/webstart/JGoogleAnalytics_0.3.jar
-	source = http://www.jalview.org/webstart/Jmol-14.6.4_2016.10.26.jar
-	source = http://www.jalview.org/webstart/VARNAv3-93.jar
-	source = http://www.jalview.org/webstart/VAqua5-patch.jar
-	source = http://www.jalview.org/webstart/activation.jar
-	source = http://www.jalview.org/webstart/apache-mime4j-0.6.jar
-	source = http://www.jalview.org/webstart/axis.jar
-	source = http://www.jalview.org/webstart/biojava-core-4.1.0.jar
-	source = http://www.jalview.org/webstart/biojava-ontology-4.1.0.jar
-	source = http://www.jalview.org/webstart/castor-1.1-cycle-xml.jar
-	source = http://www.jalview.org/webstart/commons-codec-1.3.jar
-	source = http://www.jalview.org/webstart/commons-discovery.jar
-	source = http://www.jalview.org/webstart/commons-logging-1.1.1.jar
-	source = http://www.jalview.org/webstart/groovy-all-2.4.12-indy.jar
-	source = http://www.jalview.org/webstart/htsjdk-1.133.jar
-	source = http://www.jalview.org/webstart/httpclient-4.0.3.jar
-	source = http://www.jalview.org/webstart/httpcore-4.0.1.jar
-	source = http://www.jalview.org/webstart/httpmime-4.0.3.jar
-	source = http://www.jalview.org/webstart/jabaws-min-client-2.2.0.jar
-	source = http://www.jalview.org/webstart/jalview_jnlp_vm.jar
-	source = http://www.jalview.org/webstart/java-json.jar
-	source = http://www.jalview.org/webstart/jaxrpc.jar
-	source = http://www.jalview.org/webstart/jdas-1.0.4.jar
-	source = http://www.jalview.org/webstart/jersey-client-1.19.jar
-	source = http://www.jalview.org/webstart/jersey-core-1.19.jar
-	source = http://www.jalview.org/webstart/jersey-json-1.19.jar
-	source = http://www.jalview.org/webstart/jetty-http-9.2.10.v20150310.jar
-	source = http://www.jalview.org/webstart/jetty-io-9.2.10.v20150310.jar
-	source = http://www.jalview.org/webstart/jetty-server-9.2.10.v20150310.jar
-	source = http://www.jalview.org/webstart/jetty-util-9.2.10.v20150310.jar
-	source = http://www.jalview.org/webstart/jfreesvg-2.1.jar
-	source = http://www.jalview.org/webstart/jhall.jar
-	source = http://www.jalview.org/webstart/json_simple-1.1.jar
-	source = http://www.jalview.org/webstart/jsoup-1.8.1.jar
-	source = http://www.jalview.org/webstart/jsr311-api-1.1.1.jar
-	source = http://www.jalview.org/webstart/jswingreader-0.3.jar
-	source = http://www.jalview.org/webstart/log4j-to-slf4j-2.0-rc2.jar
-	source = http://www.jalview.org/webstart/mail.jar
-	source = http://www.jalview.org/webstart/miglayout-4.0-swing.jar
-	source = http://www.jalview.org/webstart/regex.jar
-	source = http://www.jalview.org/webstart/saaj.jar
-	source = http://www.jalview.org/webstart/servlet-api-3.1.jar
-	source = http://www.jalview.org/webstart/slf4j-api-1.7.7.jar
-	source = http://www.jalview.org/webstart/slf4j-log4j12-1.7.7.jar
-	source = http://www.jalview.org/webstart/spring-core-3.0.5.RELEASE.jar
-	source = http://www.jalview.org/webstart/spring-web-3.0.5.RELEASE.jar
-	source = http://www.jalview.org/webstart/vamsas-client.jar
-	source = http://www.jalview.org/webstart/wsdl4j.jar
-	source = http://www.jalview.org/webstart/xercesImpl.jar
-	source = http://www.jalview.org/webstart/xml-apis.jar
+	source = https://www.jalview.org/webstart/jalview.jar
+	source = https://www.jalview.org/webstart/JGoogleAnalytics_0.3.jar
+	source = https://www.jalview.org/webstart/Jmol-14.6.4_2016.10.26.jar
+	source = https://www.jalview.org/webstart/VARNAv3-93.jar
+	source = https://www.jalview.org/webstart/VAqua5-patch.jar
+	source = https://www.jalview.org/webstart/activation.jar
+	source = https://www.jalview.org/webstart/apache-mime4j-0.6.jar
+	source = https://www.jalview.org/webstart/axis.jar
+	source = https://www.jalview.org/webstart/biojava-core-4.1.0.jar
+	source = https://www.jalview.org/webstart/biojava-ontology-4.1.0.jar
+	source = https://www.jalview.org/webstart/castor-1.1-cycle-xml.jar
+	source = https://www.jalview.org/webstart/commons-codec-1.3.jar
+	source = https://www.jalview.org/webstart/commons-discovery.jar
+	source = https://www.jalview.org/webstart/commons-logging-1.1.1.jar
+	source = https://www.jalview.org/webstart/groovy-all-2.4.12-indy.jar
+	source = https://www.jalview.org/webstart/htsjdk-1.133.jar
+	source = https://www.jalview.org/webstart/httpclient-4.0.3.jar
+	source = https://www.jalview.org/webstart/httpcore-4.0.1.jar
+	source = https://www.jalview.org/webstart/httpmime-4.0.3.jar
+	source = https://www.jalview.org/webstart/jabaws-min-client-2.2.0.jar
+	source = https://www.jalview.org/webstart/jalview_jnlp_vm.jar
+	source = https://www.jalview.org/webstart/java-json.jar
+	source = https://www.jalview.org/webstart/jaxrpc.jar
+	source = https://www.jalview.org/webstart/jdas-1.0.4.jar
+	source = https://www.jalview.org/webstart/jersey-client-1.19.jar
+	source = https://www.jalview.org/webstart/jersey-core-1.19.jar
+	source = https://www.jalview.org/webstart/jersey-json-1.19.jar
+	source = https://www.jalview.org/webstart/jetty-http-9.2.10.v20150310.jar
+	source = https://www.jalview.org/webstart/jetty-io-9.2.10.v20150310.jar
+	source = https://www.jalview.org/webstart/jetty-server-9.2.10.v20150310.jar
+	source = https://www.jalview.org/webstart/jetty-util-9.2.10.v20150310.jar
+	source = https://www.jalview.org/webstart/jfreesvg-2.1.jar
+	source = https://www.jalview.org/webstart/jhall.jar
+	source = https://www.jalview.org/webstart/json_simple-1.1.jar
+	source = https://www.jalview.org/webstart/jsoup-1.8.1.jar
+	source = https://www.jalview.org/webstart/jsr311-api-1.1.1.jar
+	source = https://www.jalview.org/webstart/jswingreader-0.3.jar
+	source = https://www.jalview.org/webstart/log4j-to-slf4j-2.0-rc2.jar
+	source = https://www.jalview.org/webstart/mail.jar
+	source = https://www.jalview.org/webstart/miglayout-4.0-swing.jar
+	source = https://www.jalview.org/webstart/regex.jar
+	source = https://www.jalview.org/webstart/saaj.jar
+	source = https://www.jalview.org/webstart/servlet-api-3.1.jar
+	source = https://www.jalview.org/webstart/slf4j-api-1.7.7.jar
+	source = https://www.jalview.org/webstart/slf4j-log4j12-1.7.7.jar
+	source = https://www.jalview.org/webstart/spring-core-3.0.5.RELEASE.jar
+	source = https://www.jalview.org/webstart/spring-web-3.0.5.RELEASE.jar
+	source = https://www.jalview.org/webstart/vamsas-client.jar
+	source = https://www.jalview.org/webstart/wsdl4j.jar
+	source = https://www.jalview.org/webstart/xercesImpl.jar
+	source = https://www.jalview.org/webstart/xml-apis.jar
 	source = logo.gif
 	source = jalview
 	source = jalview.desktop
diff --git a/PKGBUILD b/PKGBUILD
index e5f95766f365..f0fe2c8a035b 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,10 +1,13 @@
-# Maintainer: Stefan Seemayer <mail@semicolonsoftware.de>
+# Maintainer:
+# Contributor: Felix Golatofski <contact@xdfr.de>
+# Contributor: Stefan Seemayer <mail@semicolonsoftware.de>
+
 pkgname=jalview
 pkgver=2.11.0
-pkgrel=1
+pkgrel=2
 pkgdesc="Bioinformatics Multiple Alignment Editor"
 arch=(any)
-url="http://www.jalview.org/"
+url="https://www.jalview.org/"
 license=('GPL3')
 depends=(java-runtime)
 
@@ -12,57 +15,57 @@ depends=(java-runtime)
 ### <INJECT_HERE> ###
 
 source=(
-  'http://www.jalview.org/webstart/jalview.jar'
-  'http://www.jalview.org/webstart/JGoogleAnalytics_0.3.jar'
-  'http://www.jalview.org/webstart/Jmol-14.6.4_2016.10.26.jar'
-  'http://www.jalview.org/webstart/VARNAv3-93.jar'
-  'http://www.jalview.org/webstart/VAqua5-patch.jar'
-  'http://www.jalview.org/webstart/activation.jar'
-  'http://www.jalview.org/webstart/apache-mime4j-0.6.jar'
-  'http://www.jalview.org/webstart/axis.jar'
-  'http://www.jalview.org/webstart/biojava-core-4.1.0.jar'
-  'http://www.jalview.org/webstart/biojava-ontology-4.1.0.jar'
-  'http://www.jalview.org/webstart/castor-1.1-cycle-xml.jar'
-  'http://www.jalview.org/webstart/commons-codec-1.3.jar'
-  'http://www.jalview.org/webstart/commons-discovery.jar'
-  'http://www.jalview.org/webstart/commons-logging-1.1.1.jar'
-  'http://www.jalview.org/webstart/groovy-all-2.4.12-indy.jar'
-  'http://www.jalview.org/webstart/htsjdk-1.133.jar'
-  'http://www.jalview.org/webstart/httpclient-4.0.3.jar'
-  'http://www.jalview.org/webstart/httpcore-4.0.1.jar'
-  'http://www.jalview.org/webstart/httpmime-4.0.3.jar'
-  'http://www.jalview.org/webstart/jabaws-min-client-2.2.0.jar'
-  'http://www.jalview.org/webstart/jalview_jnlp_vm.jar'
-  'http://www.jalview.org/webstart/java-json.jar'
-  'http://www.jalview.org/webstart/jaxrpc.jar'
-  'http://www.jalview.org/webstart/jdas-1.0.4.jar'
-  'http://www.jalview.org/webstart/jersey-client-1.19.jar'
-  'http://www.jalview.org/webstart/jersey-core-1.19.jar'
-  'http://www.jalview.org/webstart/jersey-json-1.19.jar'
-  'http://www.jalview.org/webstart/jetty-http-9.2.10.v20150310.jar'
-  'http://www.jalview.org/webstart/jetty-io-9.2.10.v20150310.jar'
-  'http://www.jalview.org/webstart/jetty-server-9.2.10.v20150310.jar'
-  'http://www.jalview.org/webstart/jetty-util-9.2.10.v20150310.jar'
-  'http://www.jalview.org/webstart/jfreesvg-2.1.jar'
-  'http://www.jalview.org/webstart/jhall.jar'
-  'http://www.jalview.org/webstart/json_simple-1.1.jar'
-  'http://www.jalview.org/webstart/jsoup-1.8.1.jar'
-  'http://www.jalview.org/webstart/jsr311-api-1.1.1.jar'
-  'http://www.jalview.org/webstart/jswingreader-0.3.jar'
-  'http://www.jalview.org/webstart/log4j-to-slf4j-2.0-rc2.jar'
-  'http://www.jalview.org/webstart/mail.jar'
-  'http://www.jalview.org/webstart/miglayout-4.0-swing.jar'
-  'http://www.jalview.org/webstart/regex.jar'
-  'http://www.jalview.org/webstart/saaj.jar'
-  'http://www.jalview.org/webstart/servlet-api-3.1.jar'
-  'http://www.jalview.org/webstart/slf4j-api-1.7.7.jar'
-  'http://www.jalview.org/webstart/slf4j-log4j12-1.7.7.jar'
-  'http://www.jalview.org/webstart/spring-core-3.0.5.RELEASE.jar'
-  'http://www.jalview.org/webstart/spring-web-3.0.5.RELEASE.jar'
-  'http://www.jalview.org/webstart/vamsas-client.jar'
-  'http://www.jalview.org/webstart/wsdl4j.jar'
-  'http://www.jalview.org/webstart/xercesImpl.jar'
-  'http://www.jalview.org/webstart/xml-apis.jar'
+  'https://www.jalview.org/webstart/jalview.jar'
+  'https://www.jalview.org/webstart/JGoogleAnalytics_0.3.jar'
+  'https://www.jalview.org/webstart/Jmol-14.6.4_2016.10.26.jar'
+  'https://www.jalview.org/webstart/VARNAv3-93.jar'
+  'https://www.jalview.org/webstart/VAqua5-patch.jar'
+  'https://www.jalview.org/webstart/activation.jar'
+  'https://www.jalview.org/webstart/apache-mime4j-0.6.jar'
+  'https://www.jalview.org/webstart/axis.jar'
+  'https://www.jalview.org/webstart/biojava-core-4.1.0.jar'
+  'https://www.jalview.org/webstart/biojava-ontology-4.1.0.jar'
+  'https://www.jalview.org/webstart/castor-1.1-cycle-xml.jar'
+  'https://www.jalview.org/webstart/commons-codec-1.3.jar'
+  'https://www.jalview.org/webstart/commons-discovery.jar'
+  'https://www.jalview.org/webstart/commons-logging-1.1.1.jar'
+  'https://www.jalview.org/webstart/groovy-all-2.4.12-indy.jar'
+  'https://www.jalview.org/webstart/htsjdk-1.133.jar'
+  'https://www.jalview.org/webstart/httpclient-4.0.3.jar'
+  'https://www.jalview.org/webstart/httpcore-4.0.1.jar'
+  'https://www.jalview.org/webstart/httpmime-4.0.3.jar'
+  'https://www.jalview.org/webstart/jabaws-min-client-2.2.0.jar'
+  'https://www.jalview.org/webstart/jalview_jnlp_vm.jar'
+  'https://www.jalview.org/webstart/java-json.jar'
+  'https://www.jalview.org/webstart/jaxrpc.jar'
+  'https://www.jalview.org/webstart/jdas-1.0.4.jar'
+  'https://www.jalview.org/webstart/jersey-client-1.19.jar'
+  'https://www.jalview.org/webstart/jersey-core-1.19.jar'
+  'https://www.jalview.org/webstart/jersey-json-1.19.jar'
+  'https://www.jalview.org/webstart/jetty-http-9.2.10.v20150310.jar'
+  'https://www.jalview.org/webstart/jetty-io-9.2.10.v20150310.jar'
+  'https://www.jalview.org/webstart/jetty-server-9.2.10.v20150310.jar'
+  'https://www.jalview.org/webstart/jetty-util-9.2.10.v20150310.jar'
+  'https://www.jalview.org/webstart/jfreesvg-2.1.jar'
+  'https://www.jalview.org/webstart/jhall.jar'
+  'https://www.jalview.org/webstart/json_simple-1.1.jar'
+  'https://www.jalview.org/webstart/jsoup-1.8.1.jar'
+  'https://www.jalview.org/webstart/jsr311-api-1.1.1.jar'
+  'https://www.jalview.org/webstart/jswingreader-0.3.jar'
+  'https://www.jalview.org/webstart/log4j-to-slf4j-2.0-rc2.jar'
+  'https://www.jalview.org/webstart/mail.jar'
+  'https://www.jalview.org/webstart/miglayout-4.0-swing.jar'
+  'https://www.jalview.org/webstart/regex.jar'
+  'https://www.jalview.org/webstart/saaj.jar'
+  'https://www.jalview.org/webstart/servlet-api-3.1.jar'
+  'https://www.jalview.org/webstart/slf4j-api-1.7.7.jar'
+  'https://www.jalview.org/webstart/slf4j-log4j12-1.7.7.jar'
+  'https://www.jalview.org/webstart/spring-core-3.0.5.RELEASE.jar'
+  'https://www.jalview.org/webstart/spring-web-3.0.5.RELEASE.jar'
+  'https://www.jalview.org/webstart/vamsas-client.jar'
+  'https://www.jalview.org/webstart/wsdl4j.jar'
+  'https://www.jalview.org/webstart/xercesImpl.jar'
+  'https://www.jalview.org/webstart/xml-apis.jar'
   'logo.gif'
   'jalview'
   'jalview.desktop'
@@ -122,60 +125,62 @@ noextract=(
   'xml-apis.jar'
 )
 
-sha256sums=('c503c683d18750a08490ad9eec7e18877d752ae8ca7607c70e021cc4c0acf671'
-            '9e34f0f3b6fb78b07b20b354548ee2ae491e34a0b7dc387c303e20c6f1698fae'
-            'bf06e284c0412917482a440aa4ce5bfb64df1df3273a403c8193939f5b8d75db'
-            'd62831546d3d768ab3481846671eae9e0d8d9782096446db4f0cc46b2313fc68'
-            '05b0bf798a8ddd43e234c4120b77b1a65eb3f00e07791eebb518ef3e9f00fbbf'
-            '8559555902a4dcb07a1399a7f689116bd42e1a804b8f256aea44497d157b2369'
-            '718fd7958246f8e263807eddef4ea89dfd14e964c02c78a3f0ba0746bf032959'
-            'b51f38209abcece9e49bd369e70e1e3ba640f37842506030d090247153f01532'
-            'a8e308ed218978fc77aed03c0d504e4634014e46f0817575977c9523e3f188fc'
-            '1e4434bc5025dc73a084b278b53d5820dc61e471e88f48e31fec65eed430c910'
-            '54d1c95a880babc892e8da13768dd6e4a98d63e7f17c536f1e587400690103f7'
-            'd09d653869ce8d653cb96b865523b4ece48ec35d341f987d9b02a027507a3400'
-            '91e092f5a8cb744695f2e13247ec8672b4ba802129f414f93e2b98c494b3a4e5'
-            '4eb31efd61bded9537d06d06a7adcd720c344447e89f7046055c7bcdb36ca80d'
-            '3d922dc07e8f036a97315fcb746322814d222f81ada32b3ce7929cef6d228653'
-            '8206cb99aa57e4d797af1b165426be061383b4faf493b13b5e1ec9dfbb6b9d62'
-            '68f9c1664a027288adde4ef2f510079fd33fe02da4c0db4d5e3020039b11808d'
-            'b781df4e3041f0048c1fc71daf44b84420859b43468bb0499f0e5703a301a230'
-            '349e07ae02370b2b02408e7062b2af78f7755646a4693d25d5fd06fdccc6e211'
-            '610f598ec4ec89c3f7a07dbd72a93d0bb1814fee67c1ab8b006c06fcc342c78d'
-            'e02c7d7ebc66f9537349f76c69b65cd0f1d5676238b8b027f1f164514d1762c1'
-            '4a8fd2d40eae748fbfef7d8e8229271790e09a0cdcf1b9fab64ae83ee23847c8'
-            'd27dfecbb470ff51b8b1a27056f7e3d5224474c73ed9f4a00912636536e9e6d7'
-            '0ca32c5f5b343459c96b8bac245245c63057a632fa292ef94f9215cf572b516e'
-            '61fabcc3ace64986ecdbbc30762951049642d5d43ba7031a9fa684818edd4dd7'
-            'fad5dc8b11c5066183720a65d649f4f216e46b9e46bbc7f6454d16342b605c3e'
-            'd7a26238d61e872bb78f77d92f2c79eb1d2db49b94fa41fe13093c6fe83632ba'
-            'd6a0c276eaa44f7b1b20f6bd3d48359d5628ab6a525c7a948f374d1de8d7be1f'
-            'f18875517fd04179b3fc94ee0001635d8323dcfab86f0646d9847d76a63b701f'
-            'f29503a43ff3de272226036334764cd2f0e4714f7eaefa5807c89bd9a43b558b'
-            'e858dae934f5cf01f473a369040de9eb016274ac7e03518768c8eb0fb03985f8'
-            'f8022bb59e92032acf7f0b2edb916d2c000f017786cda500d94f5671c01af562'
-            'd9b7a3febcff52ab0e328a79ec60bacd3875ab451cf0400bb02a4cf9d72e9362'
-            '1fc89d9247779496fdbf32c75e591146ed9a2f180241531e82938267238d495c'
-            '5377f928f2c8f30302914a86cd4e357b7a46455027319fd2663dc418a0d8df5e'
-            '9b47ad4fb5f24172919a50d2883c99275f185d8a912c498146e1b6d5f00c2540'
-            'c750df074a6198be47f8c37f5fb7a795d3ee48bb2a9ebd5d50ca114aede3b3d7'
-            '4b458f7cb9b01b78a747241bfb1150353c73ad9899fd4e6b215b1996308838e2'
-            'ab1b9523efcba2993198911e0bd64f35a80c5ec1c443ea9fb62e33940512a45b'
-            '742be53a8b87095bd5b8e42635058db567bbf3e081ef91a40fb4ef09746ae452'
-            '87d54d16a26b2b0163a7cf18557c0f208c928b5309654389f5e098147982f6b4'
-            '170d6e60f775f399e7b74adb759c4393ff8f40e57fee6bb2e55410f8057eec65'
-            '4f1729ffee579454e2ccd339b7c14c5f6f4d52cacd04394112b8f5d1a5815287'
-            '1246368d10316a01a58c9cb062cd779dbdfe2e69b9f3e09a4d4d8ca3580ac0d9'
-            'aaf1c73b28bed5f5d7b4549a590dec7419d621945c3b3f21011e6bf93211e12c'
-            'd54fc5f333bd6ac11377281232512fd8e65b32549271ea7a92d5a28f50b23cdf'
-            'c9d303ed6f8c478d991dc2096eaeb548ab76e4d532cc2160fe4dfc78cdc37b1a'
-            'bd0f7da4017b5f381e71e7c1c072d8060a5469c769a682ead662fc189f5f808f'
-            'ade0c607d1d6313d2381523ce965391369736ba5d80c0603a7bde3df08d30bb6'
-            'e3f0bb4626475674428ab64c864ec48b43d01620aebcdcc3e58ac248d0acde8e'
-            '49c785261ee701eec7c6b7d4b2839077d52b2b668de0a4298f0848d89ef5cd0d'
-            '362790ef6d3e3c537a6d31663a0e7f3ec9664c90cb9dc6df4a80b016f474eaa4'
-            'd5d4f97f520d58ddb8f2552800f946c2ab6c89c3dd105b7a9cd777b9925bc17e'
-            '4c87a84ec39e677fe2922a5e78cf68cf508ec8dff5211193b11aac7cb1cf4211')
+sha256sums=(
+  'c503c683d18750a08490ad9eec7e18877d752ae8ca7607c70e021cc4c0acf671'
+  '9e34f0f3b6fb78b07b20b354548ee2ae491e34a0b7dc387c303e20c6f1698fae'
+  'bf06e284c0412917482a440aa4ce5bfb64df1df3273a403c8193939f5b8d75db'
+  'd62831546d3d768ab3481846671eae9e0d8d9782096446db4f0cc46b2313fc68'
+  '05b0bf798a8ddd43e234c4120b77b1a65eb3f00e07791eebb518ef3e9f00fbbf'
+  '8559555902a4dcb07a1399a7f689116bd42e1a804b8f256aea44497d157b2369'
+  '718fd7958246f8e263807eddef4ea89dfd14e964c02c78a3f0ba0746bf032959'
+  'b51f38209abcece9e49bd369e70e1e3ba640f37842506030d090247153f01532'
+  'a8e308ed218978fc77aed03c0d504e4634014e46f0817575977c9523e3f188fc'
+  '1e4434bc5025dc73a084b278b53d5820dc61e471e88f48e31fec65eed430c910'
+  '54d1c95a880babc892e8da13768dd6e4a98d63e7f17c536f1e587400690103f7'
+  'd09d653869ce8d653cb96b865523b4ece48ec35d341f987d9b02a027507a3400'
+  '91e092f5a8cb744695f2e13247ec8672b4ba802129f414f93e2b98c494b3a4e5'
+  '4eb31efd61bded9537d06d06a7adcd720c344447e89f7046055c7bcdb36ca80d'
+  '3d922dc07e8f036a97315fcb746322814d222f81ada32b3ce7929cef6d228653'
+  '8206cb99aa57e4d797af1b165426be061383b4faf493b13b5e1ec9dfbb6b9d62'
+  '68f9c1664a027288adde4ef2f510079fd33fe02da4c0db4d5e3020039b11808d'
+  'b781df4e3041f0048c1fc71daf44b84420859b43468bb0499f0e5703a301a230'
+  '349e07ae02370b2b02408e7062b2af78f7755646a4693d25d5fd06fdccc6e211'
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+  'd6a0c276eaa44f7b1b20f6bd3d48359d5628ab6a525c7a948f374d1de8d7be1f'
+  'f18875517fd04179b3fc94ee0001635d8323dcfab86f0646d9847d76a63b701f'
+  'f29503a43ff3de272226036334764cd2f0e4714f7eaefa5807c89bd9a43b558b'
+  'e858dae934f5cf01f473a369040de9eb016274ac7e03518768c8eb0fb03985f8'
+  'f8022bb59e92032acf7f0b2edb916d2c000f017786cda500d94f5671c01af562'
+  'd9b7a3febcff52ab0e328a79ec60bacd3875ab451cf0400bb02a4cf9d72e9362'
+  '1fc89d9247779496fdbf32c75e591146ed9a2f180241531e82938267238d495c'
+  '5377f928f2c8f30302914a86cd4e357b7a46455027319fd2663dc418a0d8df5e'
+  '9b47ad4fb5f24172919a50d2883c99275f185d8a912c498146e1b6d5f00c2540'
+  'c750df074a6198be47f8c37f5fb7a795d3ee48bb2a9ebd5d50ca114aede3b3d7'
+  '4b458f7cb9b01b78a747241bfb1150353c73ad9899fd4e6b215b1996308838e2'
+  'ab1b9523efcba2993198911e0bd64f35a80c5ec1c443ea9fb62e33940512a45b'
+  '742be53a8b87095bd5b8e42635058db567bbf3e081ef91a40fb4ef09746ae452'
+  '87d54d16a26b2b0163a7cf18557c0f208c928b5309654389f5e098147982f6b4'
+  '170d6e60f775f399e7b74adb759c4393ff8f40e57fee6bb2e55410f8057eec65'
+  '4f1729ffee579454e2ccd339b7c14c5f6f4d52cacd04394112b8f5d1a5815287'
+  '1246368d10316a01a58c9cb062cd779dbdfe2e69b9f3e09a4d4d8ca3580ac0d9'
+  'aaf1c73b28bed5f5d7b4549a590dec7419d621945c3b3f21011e6bf93211e12c'
+  'd54fc5f333bd6ac11377281232512fd8e65b32549271ea7a92d5a28f50b23cdf'
+  'c9d303ed6f8c478d991dc2096eaeb548ab76e4d532cc2160fe4dfc78cdc37b1a'
+  'bd0f7da4017b5f381e71e7c1c072d8060a5469c769a682ead662fc189f5f808f'
+  'ade0c607d1d6313d2381523ce965391369736ba5d80c0603a7bde3df08d30bb6'
+  'e3f0bb4626475674428ab64c864ec48b43d01620aebcdcc3e58ac248d0acde8e'
+  '49c785261ee701eec7c6b7d4b2839077d52b2b668de0a4298f0848d89ef5cd0d'
+  '362790ef6d3e3c537a6d31663a0e7f3ec9664c90cb9dc6df4a80b016f474eaa4'
+  'd5d4f97f520d58ddb8f2552800f946c2ab6c89c3dd105b7a9cd777b9925bc17e'
+  '4c87a84ec39e677fe2922a5e78cf68cf508ec8dff5211193b11aac7cb1cf4211'
+)
 
 ### </INJECT_HERE> ###
 
diff --git a/update_sources.py b/update_sources.py
index c089ee02b7ba..8ef2ca5e7523 100755
--- a/update_sources.py
+++ b/update_sources.py
@@ -5,8 +5,8 @@ import sys
 from requests.compat import urljoin
 import xml.etree.ElementTree as ET
 
-JNLP_SOURCE = 'http://www.jalview.org/webstart/jalview.jnlp'
-BASE_URL = 'http://www.jalview.org/webstart/'
+JNLP_SOURCE = 'https://www.jalview.org/webstart/jalview.jnlp'
+BASE_URL = 'https://www.jalview.org/webstart/'
 
 EXTRA_SOURCES = [
     ("logo.gif", '362790ef6d3e3c537a6d31663a0e7f3ec9664c90cb9dc6df4a80b016f474eaa4'),