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author | Lev Levitsky | 2020-10-01 03:01:42 +0300 |
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committer | Lev Levitsky | 2020-10-01 03:01:42 +0300 |
commit | ef60b111e5d12fe6c2bd347aea14fc431f42d6e9 (patch) | |
tree | 03de50db0b403494fbe7161f2c8983abb66cb08c /CHANGELOG | |
parent | 45059732020942efd9c6b4c22e9bde5c2bec94d8 (diff) | |
download | aur-ef60b111e5d12fe6c2bd347aea14fc431f42d6e9.tar.gz |
4.3.3
Diffstat (limited to 'CHANGELOG')
-rw-r--r-- | CHANGELOG | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/CHANGELOG b/CHANGELOG index 28f0657f7e13..7ff318be6672 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,3 +1,22 @@ +4.3.3 +----- + + - Add :py:func:`pyteomics.electrochem.gravy` (`#9 <https://github.com/levitsky/pyteomics/pull/9>`_). + + - Fixes and improvements in :py:func:`pyteomics.pepxml.roc_curve` (`#10 <https://github.com/levitsky/pyteomics/pull/10>`_). + + - Changes in guessing behavior of :py:func:`read` functions. + + In modules that implement :ref:`indexing parsers <indexing>` for non-XML formats (MGF, FASTA, PEFF, ms1/ms2), + when a parser is instantiated using :py:func:`read`, the parser class to instantiate is guessed + based on the mode of the file object passed to :py:func:`read` (text or binary). + + With some file-like objects, mode cannot be easily deduced without consuming some of the data. + You will now see more warnings in case `use_index` is not explicitly passed to :py:func:`read` and reading mode is not obvious. + There will also be warnings if `use_index` is specified but the file is opened in the wrong mode. + To avoid all of this, you are encouraged to instantiate parser classes directly, + or explicitly specify `use_index` to :py:func:`read` in all corner cases. + 4.3.2 ----- |