summarylogtreecommitdiffstats
path: root/CHANGELOG
diff options
context:
space:
mode:
authorLev Levitsky2020-10-01 03:01:42 +0300
committerLev Levitsky2020-10-01 03:01:42 +0300
commitef60b111e5d12fe6c2bd347aea14fc431f42d6e9 (patch)
tree03de50db0b403494fbe7161f2c8983abb66cb08c /CHANGELOG
parent45059732020942efd9c6b4c22e9bde5c2bec94d8 (diff)
downloadaur-ef60b111e5d12fe6c2bd347aea14fc431f42d6e9.tar.gz
4.3.3
Diffstat (limited to 'CHANGELOG')
-rw-r--r--CHANGELOG19
1 files changed, 19 insertions, 0 deletions
diff --git a/CHANGELOG b/CHANGELOG
index 28f0657f7e13..7ff318be6672 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,22 @@
+4.3.3
+-----
+
+ - Add :py:func:`pyteomics.electrochem.gravy` (`#9 <https://github.com/levitsky/pyteomics/pull/9>`_).
+
+ - Fixes and improvements in :py:func:`pyteomics.pepxml.roc_curve` (`#10 <https://github.com/levitsky/pyteomics/pull/10>`_).
+
+ - Changes in guessing behavior of :py:func:`read` functions.
+
+ In modules that implement :ref:`indexing parsers <indexing>` for non-XML formats (MGF, FASTA, PEFF, ms1/ms2),
+ when a parser is instantiated using :py:func:`read`, the parser class to instantiate is guessed
+ based on the mode of the file object passed to :py:func:`read` (text or binary).
+
+ With some file-like objects, mode cannot be easily deduced without consuming some of the data.
+ You will now see more warnings in case `use_index` is not explicitly passed to :py:func:`read` and reading mode is not obvious.
+ There will also be warnings if `use_index` is specified but the file is opened in the wrong mode.
+ To avoid all of this, you are encouraged to instantiate parser classes directly,
+ or explicitly specify `use_index` to :py:func:`read` in all corner cases.
+
4.3.2
-----