diff options
| author | BioArchLinuxBot | 2023-06-11 18:09:20 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-06-11 18:09:20 +0000 |
| commit | b20eb2ede8c418fc2c2044c4d30c10c317b13138 (patch) | |
| tree | 047f2388d168db224c3190b123171429b1dea29b /PKGBUILD | |
| parent | 88c807a0d6c43befea598c1a2a1ae236a31f152a (diff) | |
| download | aur-augustus.tar.gz | |
[lilac] updated to 3.5.0-5
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 14 |
1 files changed, 8 insertions, 6 deletions
@@ -1,21 +1,23 @@ -# Maintainer: bipin kumar <bipin@ccmb.res.in> +# Maintainer: bipin kumar <kbipinkumar@pm.me> # Contributor: sukanka <su975853527 at gmail> pkgname=augustus _pkgname=Augustus pkgver=3.5.0 -pkgrel=4 +pkgrel=5 pkgdesc="A eukaryotic gene prediction program" arch=('i686' 'x86_64') url="http://augustus.gobics.de/" license=('custom:Artistic-2.0') -depends=('bamtools' 'boost-libs' 'gsl' 'mysql++' 'sqlite' 'python' 'lpsolve' 'perl' 'htslib') +depends=('bamtools' 'boost-libs' 'gsl' 'mysql++' 'sqlite' 'python' 'lpsolve' 'perl' 'htslib' 'python-pandas' 'python-numpy' 'python-biopython' 'mariadb-libs' 'gcc-libs' 'glibc' 'bash') makedepends=('boost' 'suitesparse' 'samtools' ) -source=($pkgname-$pkgver.tar.gz::https://github.com/Gaius-Augustus/Augustus/archive/v$pkgver.tar.gz) -sha256sums=('5ed6ce6106303b800c5e91d37a250baff43b20824657b853ae04d11ad8bdd686') +source=($pkgname-$pkgver.tar.gz::https://github.com/Gaius-Augustus/Augustus/archive/v$pkgver.tar.gz + "$pkgname.patch::https://github.com/Gaius-Augustus/Augustus/pull/395.patch") +sha256sums=('5ed6ce6106303b800c5e91d37a250baff43b20824657b853ae04d11ad8bdd686' + 'f6676c6f9e5fade9adaf6a457fd87c9401a5ebc5f6aa4a87037990dd381afd1d') prepare() { cd $_pkgname-$pkgver - sed -i "s|/usr/local/bin|/usr/bin|" Makefile + patch -p1 < $srcdir/$pkgname.patch } build() { |