bcftools-1.4.1-1

1 files changed, 8 insertions, 3 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 274884614651..3b311bcd3714 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,13 +1,14 @@
 # Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
 
 pkgname=bcftools
-pkgver=1.4
+pkgver=1.4.1
 pkgrel=1
 pkgdesc="Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants"
 arch=('i686' 'x86_64')
 url="http://samtools.github.io/bcftools/"
 license=('GPL')
 depends=('gsl' 'htslib')
+optdepends=('python2: needed for some scripts')
 source=(https://github.com/samtools/bcftools/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2
         makefile-system-htslib.patch)
 
@@ -17,6 +18,10 @@ prepare() {
   # prevent shipped htslib to be used
   rm -rf htslib-$pkgver
 
+  sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \
+      -e 's|#!/usr/bin/python|#!/usr/bin/env python2|' \
+      -i misc/plot-roh.py misc/guess-ploidy.py
+
   # patch Makefile to make it work with a system-provided htslib
   patch -i $srcdir/makefile-system-htslib.patch
 }
@@ -39,5 +44,5 @@ package() {
   make prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 DESTDIR=$pkgdir install
 }
 
-md5sums=('50ccf0a073bd70e99cdb3c8be830416e'
-         'baba7d2fc8947c7ec29ff4498637ea85')
+md5sums=('103729569ca3e265b13d2fed5775016e'
+         '1777e7d3bcfd428de407f62c870904cb')