diff options
| author | Saulius Lukauskas | 2015-08-05 11:47:08 +0100 |
|---|---|---|
| committer | Saulius Lukauskas | 2015-08-05 11:47:08 +0100 |
| commit | 8222696acbba24707ebf34a4bcd2a5ebc678e1e2 (patch) | |
| tree | 88cc73e50357d990ff7d0a2c0ec204a419a21010 /PKGBUILD | |
| download | aur-8222696acbba24707ebf34a4bcd2a5ebc678e1e2.tar.gz | |
Initial import
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..c5c0ae6a7ba7 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,34 @@ +# Maintainer: Sauliusl <luksaulius[at]gmail[dot]com> +pkgname=beads +pkgver=1.1 +pkgrel=1 +pkgdesc="Bias Elimination Algorithm for Deep Sequencing." +url="http://beads.sourceforge.net/" +arch=('x86_64') +license=('unknown') +depends=('python2' 'java-environment') +optdepends=() +makedepends=('python2') +conflicts=() +replaces=() +backup=() +install=() +source=("http://downloads.sourceforge.net/project/beads/BEADS-${pkgver}.tar.gz" + "beads.sh") +sha1sums=('f83587d3b8c7b1eb619d81e17499e8f8fdae3138' + 'b30b472b1ff087eb3c015f00bd4619b346421cf5') +package() { + cd "${srcdir}/BEADS-${pkgver}" + python2 setup.py install --prefix=${pkgdir}/usr + + # Rename the python file to have .py extension + mv ${pkgdir}/usr/bin/beads ${pkgdir}/usr/bin/beads.py + # install script that presets the classpath beforehand in place of it + install -Dm755 ${srcdir}/beads.sh ${pkgdir}/usr/bin/beads + + # Install the java classes + install -d ${pkgdir}/usr/share/java/${pkgname} + install -Dm0644 BEADSjava.jar ${pkgdir}/usr/share/java/${pkgname} +} + +# vim:set ts=2 sw=2 et:
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