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authorBioArchLinuxBot2023-04-28 03:35:59 +0000
committerBioArchLinuxBot2023-04-28 03:35:59 +0000
commit363105fe38e7762ae7064fdbe4725167e99a94de (patch)
tree32e369c609f15b132d034dab3de473fb50899cd3 /PKGBUILD
parent3538477cf356f2230822c9f25dc16e95382c7917 (diff)
downloadaur-363105fe38e7762ae7064fdbe4725167e99a94de.tar.gz
[lilac] updated to 2.7.4-5
Diffstat (limited to 'PKGBUILD')
-rw-r--r--PKGBUILD13
1 files changed, 9 insertions, 4 deletions
diff --git a/PKGBUILD b/PKGBUILD
index 2e1cca2e810a..445cbb0e6f45 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -5,7 +5,7 @@
pkgname=beast2
pkgver=2.7.4
_pkgver=2.7.2
-pkgrel=4
+pkgrel=5
pkgdesc="Bayesian Evolutionary Analysis by Sampling Trees. https://doi.org/10.1371/journal.pcbi.1003537"
arch=('any')
url="http://www.beast2.org/"
@@ -35,8 +35,8 @@ sha256sums=('cd16e9bc5615aff063d61ec1edd66d4cd8bb87dcaabcb1508b42809f34b7b258'
'337159e676c057af33fdafef8d64fb47e5a78d9130b7d4a8d5dd5c8d1bb8d35f'
'9ca416360e1697768aa5b9cad2cae13b2d9077dd2386d0950466bad6d5cccf60'
'7b6c125b3dbe7f65cd4903ebca6106893c808f2b444c29aba082f9a66c7ac6af')
-depends=('java-runtime=17' 'java17-openjfx')
-makedepends=('ant' 'git' 'java-environment=17')
+depends=('java-runtime' 'java-openjfx')
+makedepends=('ant' 'java-environment')
optdepends=('beagle-lib')
prepare(){
cd ${srcdir}
@@ -59,7 +59,7 @@ build(){
}
package() {
install -d "$pkgdir"/usr/share/beast2
- install -d ${pkgdir}/usr/bin/$bin
+ install -d ${pkgdir}/usr/bin/
cd "$srcdir/BeastFX-${pkgver}/release2/Linux/"
cp -rf beast/* "${pkgdir}/usr/share/${pkgname}"
@@ -74,6 +74,11 @@ package() {
# shipped library
install -Dm644 ${srcdir}/${pkgname}-${pkgver}/lib/*.jar -t "${pkgdir}/usr/share/${pkgname}/lib"
+ # for 2.7.4+
+ install -d "${pkgdir}/usr/share/${pkgname}/lib/packages"
+ mv ${pkgdir}/usr/share/${pkgname}/lib/BEAST.app.* "${pkgdir}/usr/share/${pkgname}/lib/packages"
+ mv ${pkgdir}/usr/share/${pkgname}/lib/BEAST.base.* "${pkgdir}/usr/share/${pkgname}/lib/packages"
+
# correct excutable
rm -rf $pkgdir/usr/share/beast2/bin/*
for exe in {"beauti","densitree","logcombiner","treeannotator","beast2","loganalyser","applauncher","packagemanager"}