version bump

1 files changed, 8 insertions, 7 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 934c4dc4e2aa..9540e89f3be6 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,15 +2,16 @@
 # Maintainer: Grey Christoforo <first name [at] last name [dot] net>
 
 pkgname=bowtie2
-pkgver=2.2.9
+pkgver=2.3.1
 pkgrel=1
 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence."
 arch=("any")
+depends=('termcap')
 optdepends=('intel-tbb: faster multithreading')
 url="http://bowtie-bio.sourceforge.net/bowtie2"
 license=('GPL3')
 source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz")
-md5sums=('168bdcd6a648e96d8a9a854cdbae24d8')
+md5sums=('537d24b27a90677bbc54b970da5b597e')
 
 prepare() {
   cd "${srcdir}/${pkgname}-${pkgver}"
@@ -22,17 +23,17 @@ build() {
    if pacman -Q intel-tbb > /dev/null 2>/dev/null; then
       #msg2 "Building with Intel's TBB multithreading support"
       #WITH_TBB=1 make prefix=/usr
-      # tbb is broken in this release...remove this when fixed
-      WITH_TBB=0 make 
+      # tbb is _STILL_ broken in this release...remove this when fixed
+      NO_TBB=1 make prefix=/usr
    else
       msg2 "You haven't installed the intel-tbb package; building without Intel's TBB multithreading support"
-      WITH_TBB=0 make 
+      NO_TBB=1 make
    fi
 }
 
 package() {
-   mkdir -p "${pkgdir}/opt/${pkgname}"
-   cp -a "${srcdir}/${pkgname}-${pkgver}"/* "${pkgdir}/opt/${pkgname}"/.
+   mkdir -p "${pkgdir}/opt/"
+   cp -a "${srcdir}/${pkgname}-${pkgver}" "${pkgdir}/opt/${pkgname}"
    cd "${srcdir}/${pkgname}-${pkgver}"
    make prefix=/usr DESTDIR="${pkgdir}" install
    install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}"