bump to 2.2.9

1 files changed, 7 insertions, 7 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 0c815625860d..934c4dc4e2aa 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,7 +2,7 @@
 # Maintainer: Grey Christoforo <first name [at] last name [dot] net>
 
 pkgname=bowtie2
-pkgver=2.2.8
+pkgver=2.2.9
 pkgrel=1
 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence."
 arch=("any")
@@ -10,7 +10,7 @@ optdepends=('intel-tbb: faster multithreading')
 url="http://bowtie-bio.sourceforge.net/bowtie2"
 license=('GPL3')
 source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz")
-md5sums=('42948ac7744d691a7a643ed94a36ed63')
+md5sums=('168bdcd6a648e96d8a9a854cdbae24d8')
 
 prepare() {
   cd "${srcdir}/${pkgname}-${pkgver}"
@@ -20,13 +20,13 @@ prepare() {
 build() {
    cd "${srcdir}/${pkgname}-${pkgver}"
    if pacman -Q intel-tbb > /dev/null 2>/dev/null; then
-      msg2 "Building with Intel's TBB multithreading support"
-      #WITH_TBB=1 make
+      #msg2 "Building with Intel's TBB multithreading support"
+      #WITH_TBB=1 make prefix=/usr
       # tbb is broken in this release...remove this when fixed
-      WITH_TBB=0 make
+      WITH_TBB=0 make 
    else
       msg2 "You haven't installed the intel-tbb package; building without Intel's TBB multithreading support"
-      WITH_TBB=0 make
+      WITH_TBB=0 make 
    fi
 }
 
@@ -34,7 +34,7 @@ package() {
    mkdir -p "${pkgdir}/opt/${pkgname}"
    cp -a "${srcdir}/${pkgname}-${pkgver}"/* "${pkgdir}/opt/${pkgname}"/.
    cd "${srcdir}/${pkgname}-${pkgver}"
-   make DESTDIR="${pkgdir}" install
+   make prefix=/usr DESTDIR="${pkgdir}" install
    install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}"
    install -Dm644 ${srcdir}/${pkgname}-${pkgver}/LICENSE -t "$pkgdir/usr/share/licenses/${pkgname}"
 }