diff options
author | Maël Kerbiriou | 2022-02-01 18:42:17 +0100 |
---|---|---|
committer | Maël Kerbiriou | 2022-02-01 18:44:09 +0100 |
commit | 513b5b100b06af6f9d0c4742688ce6f0e4ac642a (patch) | |
tree | db6ff218983d228735e39da32dc9d4547e74aee2 /PKGBUILD | |
parent | b2f944b5a4fc95cead8f5261e2943382e3b41d48 (diff) | |
download | aur-bwa.tar.gz |
Backport some compiler fixes from master
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 28 |
1 files changed, 18 insertions, 10 deletions
@@ -1,29 +1,37 @@ -# Maintainer: Alex Peltzer ("alexpe87") <alexpe.aur@mailbox.org> +# Maintainer: Maël Kerbiriou <m431.kerbiriou@gmail.com> +# Previous maintainer: Alex Peltzer ("alexpe87") <alexpe.aur@mailbox.org> # Contributor: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=bwa pkgver=0.7.17 _pkgver=${pkgver} -pkgrel=1 +pkgrel=2 pkgdesc="Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome" arch=('i686' 'x86_64') url="http://bio-bwa.sourceforge.net/" license=('GPL3') depends=('perl' 'zlib') -source=(https://github.com/lh3/bwa/releases/download/v$pkgver/bwa-${_pkgver}.tar.bz2) -md5sums=('82cba7ef695538e6a38b9d4156837381') +source=("https://github.com/lh3/bwa/releases/download/v$pkgver/bwa-${_pkgver}.tar.bz2" + 'backported.patch') +sha256sums=('de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd' + 'ec91adc478cbf207c694c5b7e46738dcbd77cd77180c7a6279d3e000108fe8c2') + +prepare() { + patch --directory="$pkgname-$_pkgver" --forward --strip=1 --input="${srcdir}/backported.patch" +} build() { - cd $srcdir/$pkgname-$_pkgver + cd "$srcdir/$pkgname-$_pkgver" make } package() { - cd $srcdir/$pkgname-$_pkgver + cd "$srcdir/$pkgname-$_pkgver" - install -Dm755 bwa $pkgdir/usr/bin/bwa - install -Dm755 qualfa2fq.pl $pkgdir/usr/bin/qualfa2fq - install -Dm755 xa2multi.pl $pkgdir/usr/bin/xa2multi - install -Dm644 bwa.1 $pkgdir/usr/share/man/man1/bwa.1 + install -Dm755 bwa "$pkgdir/usr/bin/bwa" + install -Dm755 qualfa2fq.pl "$pkgdir/usr/bin/qualfa2fq" + install -Dm755 xa2multi.pl "$pkgdir/usr/bin/xa2multi" + install -Dm644 bwa.1 "$pkgdir/usr/share/man/man1/bwa.1" + install -Dm644 COPYING "$pkgdir/usr/share/licenses/${pkgname}" } |