inital commit

1 files changed, 69 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer: Mirko Scholz
+
+pkgname=cctbx-bin
+pkgver=1617
+pkgrel=4
+pkgdesc="The Computational Crystallography Toolbox (cctbx)"
+arch=('x86_64')
+url="https://cci.lbl.gov/cctbx_docs/index.html"
+license=('BSD')
+depends=(python2 libpng15)
+makedepends=(fakechroot)
+_installer="cctbx-installer-dev-$pkgver-intel-linux-2.6-x86_64-centos6"
+source=("http://cci.lbl.gov/cctbx_build/dev-${pkgver}/${_installer}.tar.gz")
+noextract=("${source[@]##*/}")
+sha1sums=('6e66addfa2df9e96c29058a95748eeb792319877')
+options=(!strip)
+
+#
+# this makes CCTBX available on Arch Linux
+#
+# I am not using any graphical facilities, only cctbx python modules
+#
+# The following tests succeed mostly
+#
+# cctbx.python /opt/cctbx-*/modules/cctbx_project/cctbx/run_tests.py
+# cctbx.python /opt/cctbx-*/modules/cctbx_project/libtbx/run_tests.py
+# cctbx.python /opt/cctbx-*/modules/cctbx_project/iotbx/run_tests.py
+#
+# The following tests fail 
+#
+# cctbx.python /opt/cctbx-*/modules/cctbx_project/scitbx/run_tests.py
+
+package() {
+  # follows https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=microchip-mplabx-bin
+  mkdir -p "$pkgdir"/{etc,tmp,opt}
+  ln -s /usr/bin "$pkgdir"
+  echo "root:x:0:0:root:/root:/bin/bash" > "${pkgdir}/etc/passwd"
+  echo "root:x:0:root" > "${pkgdir}/etc/group"
+  # cp -r --reflink=auto --no-dereference --preserve=links "$srcdir/$_installer" "$pkgdir/tmp"
+  (cd "$pkgdir/tmp"; tar xf "$srcdir/${_installer}.tar.gz")
+  cat <<EOF > "$pkgdir/tmp/install.sh"
+#!/bin/sh
+PATH=/bin
+echo Running CCTBX installer...
+cd "/tmp/$_installer"
+./install --verbose --prefix /opt
+EOF
+  chmod 0755 "$pkgdir/tmp/install.sh"
+
+  # the installer uses the system's python (although it ships with its own version)
+  env FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/usr \
+  fakechroot chroot "$pkgdir" /tmp/install.sh
+
+  (cd "${pkgdir}/tmp/${_installer}"; install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE")
+
+  rm -rf "$pkgdir"/{etc,tmp,bin}
+
+  # don't know why it isn't set executable, tests work better that way
+  find "$pkgdir/opt" -name libtbx.python -exec chmod a+x '{}' ';'
+
+  mkdir -p "$pkgdir/usr/bin"
+  cat <<EOF > "$pkgdir/usr/bin/cctbx.python"
+#!/bin/sh
+. /opt/cctbx-dev-${pkgver}/cctbx_env.sh
+exec cctbx.python "\$@"
+EOF
+  chmod a+x "$pkgdir/usr/bin/cctbx.python"
+
+}