init

1 files changed, 45 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..dfb5f3c86fc2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# Maintainer: PumpkinCheshire <sollyonzou at gmail dot com>
+
+pkgname=fermi-lite
+pkgver=0.1.r13.g85f159e
+pkgrel=2
+pkgdesc="Standalone C library for assembling Illumina short reads in small regions"
+arch=('x86_64')
+url="https://github.com/lh3/fermi-lite"
+license=('MIT')
+depends=('zlib')
+makedepends=('git' 'make' 'patch')
+source=("git+${url}.git"
+"001-bwa.patch::${url}/compare/master...walaj:fermi-lite:master.diff"
+)
+sha256sums=('SKIP'
+            '9f77d739ad2b276344d4ee3301c41247550242c7ad26dd47088934c1341e3bda')
+
+pkgver() {
+    git -C ${pkgname} describe --long --tags | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g'
+}
+
+prepare(){
+    cd ${pkgname}
+    sed -i "s|CFLAGS=|CFLAGS=-fPIC |" Makefile
+    sed -i "s|^const|extern const|" rle.h
+    patch --strip=1 --fuzz=3 < ../001-bwa.patch
+}
+build() {
+    cd "$srcdir/${pkgname}"
+    make
+    mkdir lib
+    cp libfml.a lib
+    cd lib
+    ar -x libfml.a
+    gcc -shared  -o libfml.so *.o
+}
+
+package() {
+    install -Dm755 -t "${pkgdir}/usr/bin" ${srcdir}/${pkgname}/fml-asm
+    install -Dm644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ${pkgname}/LICENSE.txt
+    cd $srcdir/${pkgname}
+    install -Dm644 *.h -t "${pkgdir}/usr/include/${pkgname}"
+    install -Dm755 lib/libfml.so -t "${pkgdir}/usr/lib"
+    ln -s /usr/lib/libfml.so "${pkgdir}/usr/lib/libfermi-lite.so"
+}