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author | Christian Krause | 2017-09-28 10:36:22 +0200 |
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committer | Christian Krause | 2017-09-28 10:36:22 +0200 |
commit | e4dbf122be82dc9f63b3b66a15f796459228bfa9 (patch) | |
tree | a21ab286441024e317ff052ea269ac2ae2594735 /PKGBUILD | |
download | aur-e4dbf122be82dc9f63b3b66a15f796459228bfa9.tar.gz |
gatk-3.8.0-1
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..efca820e9397 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,27 @@ +# Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org> + +pkgname=gatk +_pkgver=3.8-0 +pkgver=${_pkgver/-/.} +pkgrel=1 +pkgdesc='Genome Analysis Toolkit - Variant Discovery in High-Throughput Sequencing Data' +arch=('any') +url="https://software.broadinstitute.org/gatk/" +license=('custom') +depends=('bash' 'java-runtime>=8') +source=("$pkgname-$pkgver.tar.bz2::https://software.broadinstitute.org/gatk/download/auth?package=GATK" + 'gatk-license.txt' + 'gatk.sh') +md5sums=('0581308d2a25f10d11d3dfd0d6e4d28e' + 'ed8d005306adf1d18c477ee5b19c4b9e' + '8a0bd3c67fc4670b36d28bc383dc883b') + +package() { + install -Dm755 $srcdir/gatk.sh $pkgdir/usr/bin/gatk + + install -Dm644 \ + $srcdir/GenomeAnalysisTK-$_pkgver-*/GenomeAnalysisTK.jar \ + $pkgdir/usr/share/java/gatk/GenomeAnalysisTK.jar + + install -Dm644 $srcdir/gatk-license.txt $pkgdir/usr/share/licenses/gatk/LICENSE +} |