Update to 2.5.1

HiDPI mode
New icon
Java 11 required

1 files changed, 22 insertions, 19 deletions

diff --git a/PKGBUILD b/PKGBUILD
index de069bbe5414..e94a13e22055 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,32 +3,35 @@
 # Maintainer:  Piotr Balwierz <parseByHuman(surname at email_service_of_google)>
 
 pkgname=igv
-pkgver=2.4.11
-_pkgver=${pkgver//_/-}
-pkgrel=2
-pkgdesc="High-performance visualization tool for interactive exploration of large, integrated genomic datasets."
+pkgver=2.5.1
+_pkgver=${pkgver//_/-}   # currently not needed
+pkgrel=1
+pkgdesc="High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute."
 arch=('any')
 url="http://www.broadinstitute.org/software/igv/home"
 license=('LGPL')
-depends=('java-environment=8' 'archlinux-java-run' 'sh')
+depends=('jre-openjdk' 'archlinux-java-run' 'sh')
 #"igv-$pkgver.tar.gz::https://github.com/igvteam/igv/archive/v$pkgver.tar.gz"
-source=("http://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_$pkgver.zip"
-	"http://www.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/tools.png"
+source=("http://data.broadinstitute.org/igv/projects/downloads/2.5/IGV_Linux_$pkgver.zip"
+	#"http://www.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/tools.png"
 	"$pkgname.sh"
-	"$pkgname.desktop")
-sha512sums=('d3f7c0e3a4b090fe3ae1d21375be0285c026dcf284fdefdaa02bd0247bd27515e9c2dc14798ebad2f0273bd70bbdad2aaff3dc91ecfd9cc74993246ae0b10a98'
-            'e71a0dc70c717b3db00268632500b5723b8cddb1ecfbd8ce48b77ffad59bf93a8d275cc5ebd18b9eb1025200438ac55ec348def343b1b5f72a2c982b5dc4cc90'
-            '1f0cdbb8467de2a4b287da3fc366f8b5b967f744dab28ffb613a88257caa326b7a1332c8b656ec8fd69ef00114a8d658db6a73fde89b55e7918be094cc6f56ff'
-            '5ba8666c9c0568f11baf79242c4853964a4061269c0b84529b71a02a106e142bc559ccb97a6a51801dbccacf5f2061cead315b5ece60fc4564c3c38b02d733e7')
+	"igv_hidpi.sh"
+	"$pkgname.desktop"
+	"igv_hidpi.desktop")
+sha512sums=('7933b20d7e06b9c50f8bae9ecc8dd0e9723b887576bb2ccf50358cc53e7ffac19990a79f2ee4f8e6e8b7dbc7e298c037ce8e9781cc8179c7ca7ef1f5ac985d41'
+            #'e71a0dc70c717b3db00268632500b5723b8cddb1ecfbd8ce48b77ffad59bf93a8d275cc5ebd18b9eb1025200438ac55ec348def343b1b5f72a2c982b5dc4cc90'
+            '70de493d5188d6eedbd0bf7c74d41ce4829efab75e3a79b56f998326c209d0184f5d3624d6b85d01ad93f0462e785c314322ef4a9260ead6d747f1791ecbe649'
+            '60c9c8c6f66259a4edafd1d58d1f1ebcda4450f7620d4c0fc987d5875c2fd531bc2a3159fcdb77975bf07002036e3544f4d301a31d1085ab24d576eea1f8adcb'
+            'c6bd4fc8bb7e43ee0fe9a4709e716d015c678bdd8bcb897876c267ec48441e2383aebb26b80457d2238f79546537af3409aa698544dc0043ff2c921f18126662'
+            '0d52cbd6adc2bf36f8b80acdb6d72b30d52e920b301e7af75ddee8d942c9f3467f7aa98129984ee269c6aaaacc703fb054ba2917e0d7dbce5620050623383e5b')
 
 package() {    
   install -Dm755 $pkgname.sh "$pkgdir"/usr/bin/$pkgname
-  install -Dm644 tools.png "$pkgdir"/usr/share/pixmaps/$pkgname.png
+  install -Dm755 "$pkgname"_hidpi.sh "$pkgdir"/usr/bin/"$pkgname"_hidpi
   install -Dm644 $pkgname.desktop "$pkgdir"/usr/share/applications/$pkgname.desktop
-  cd IGV_${_pkgver}
-  install -Dm644 $pkgname.jar "$pkgdir"/usr/share/java/$pkgname/$pkgname.jar
-  install -Dm644 batik-codec__V1.7.jar \
-    "$pkgdir"/usr/share/java/$pkgname/batik-codec__V1.7.jar
-  install -Dm644 goby-io-igv__V1.0.jar \
-    "$pkgdir"/usr/share/java/$pkgname/goby-io-igv__V1.0.jar
+  install -Dm644 "$pkgname"_hidpi.desktop "$pkgdir"/usr/share/applications/"$pkgname"_hidpi.desktop
+  cd IGV_Linux_${_pkgver}
+  install -Dm644 IGV_64.png "$pkgdir"/usr/share/pixmaps/$pkgname.png
+  install -Dm644 igv.args "$pkgdir"/usr/share/java/$pkgname/igv.args
+  install -Dm644 lib/* -t "$pkgdir"/usr/share/java/$pkgname/lib/
 }