kraken to 1.1

1 files changed, 24 insertions, 16 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 4c9e483e2b74..31bcc25efa91 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,36 +1,44 @@
 # Maintainer: Clint Valentine <valentine.clint@gmail.com>
 
 pkgname=kraken
-pkgver=1.0
+pkgver=1.1
 pkgrel=1
 pkgdesc="Kraken taxonomic sequence classification system"
 arch=('i686' 'x86_64')
 url=https://github.com/DerrickWood/"${pkgname}"
 license=('GPL3')
-depends=('coreutils' 'perl' 'jellyfish')
-provides=('kraken')
-conflicts=('kraken')
-source=(https://github.com/DerrickWood/"${pkgname}"/archive/v"${pkgver}".tar.gz)
-md5sums=('e790d6b09662bbd810aa34517ef66586')
+depends=('perl')
+optdepends=('jellyfish<=1: for building Kraken databases')
+source=("${pkgname}"-"${pkgver}".tar.gz::https://github.com/DerrickWood/"${pkgname}"/archive/v"${pkgver}".tar.gz)
+sha256sums=('a4ac74c54c10920f431741c80d8a172670be12c3b352912000030fb5ea4c87a7')
+_installation_dir=/usr/share/"${pkgname}"-"${pkgver}"
 
-package() {
+prepare() {
   cd "${srcdir}"/"${pkgname}"-"${pkgver}"
+  sed -i "s#\$(KRAKEN_DIR)#${pkgdir}${_installation_dir}#g" src/Makefile
+  make -C src clean
+}
 
-  installation_dir=/usr/share/"${pkgname}"-"${pkgver}"
+build() {
+  cd "${srcdir}"/"${pkgname}"-"${pkgver}"
+  make -C src
+}
+
+package() {
+  cd "${srcdir}"/"${pkgname}"-"${pkgver}"
 
-  mkdir -p "${pkgdir}""${installation_dir}"
+  mkdir -p "${pkgdir}""${_installation_dir}"
   mkdir -p "${pkgdir}"/usr/bin
   mkdir -p "${pkgdir}"/usr/share/licenses
   mkdir -p "${pkgdir}"/usr/share/doc
 
-  sed -i "s#\$(KRAKEN_DIR)#${pkgdir}${installation_dir}#g" src/Makefile
   make -C src install
 
-  for file in scripts/*; do
-    sed -i "s|#####=KRAKEN_DIR=#####|${installation_dir}|g" "${file}"
-    sed -i "s|#####=VERSION=#####|${pkgver}|g" "${file}"
+  for scripts in scripts/*; do
+    sed -i "s|#####=KRAKEN_DIR=#####|${_installation_dir}|g" "${scripts}"
+    sed -i "s|#####=VERSION=#####|${pkgver}|g" "${scripts}"
 
-    install -Dm775 "${file}" "${pkgdir}""${installation_dir}"/
+    install -Dm775 "${scripts}" "${pkgdir}""${_installation_dir}"/
   done
 
   install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"_v"${pkgver}"/LICENSE
@@ -41,7 +49,7 @@ package() {
     install -D -m644 "${doc}" "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/"${doc}"
   done
 
-  for file in "${pkgdir}${installation_dir}"/kraken*; do
-    install -Dm775 "${file}" "${pkgdir}"/usr/bin/$(basename "${file}")
+  for file in "${pkgdir}${_installation_dir}"/kraken*; do
+    install -Dm775 "${file}" "${pkgdir}"/usr/bin/$( basename "${file}" )
   done
 }