4.10.2

1 files changed, 18 insertions, 7 deletions

diff --git a/PKGBUILD b/PKGBUILD
index a3929bea0643..0d43bef4f6be 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,17 +1,17 @@
 #Maintainer: allencch <allencch at hotmail dot com>
 #Contributor: Charles E. Vejnar
 pkgname=meme
-pkgver=4.10.1_2
-pkgrel=2
+pkgver=4.10.2
+pkgrel=1
 pkgdesc="The MEME suite provides tools for discovering and using protein and DNA sequence motifs"
 arch=("i686" "x86_64")
 url="http://meme-suite.org/"
 license=("custom")
 depends=(perl-html-template tcsh python2 perl-xml-parser openmpi)
-source=("http://meme-suite.org/meme-software/4.10.1/${pkgname}_${pkgver}.tar.gz"
+source=("http://meme-suite.org/meme-software/${pkgver}/meme_${pkgver}.tar.gz"
         "python27.patch")
-sha1sums=("64d37d5cf86b1595f07425b8d2fcc9346e84abbc"
-          "737b1ef7cb277412c2fff692a2e9b2a261e1b532")
+sha1sums=('230a52664c4739354f2ac79ace9b55f3dd2fde8d'
+          '737b1ef7cb277412c2fff692a2e9b2a261e1b532')
 
 prepare() {
     cd $srcdir/${pkgname}_${pkgver%_*}
@@ -23,7 +23,7 @@ build() {
     cd $srcdir/${pkgname}_${pkgver%_*}
 
     LDFLAGS="-Wl,--allow-multiple-definition" ./configure --prefix=/usr --program-prefix="meme-" --docdir='${prefix}'/usr/share/doc/meme --sysconfdir='${prefix}'/../etc/meme --with-python=/usr/bin/python2.7
-    
+
     make
 }
 
@@ -46,6 +46,17 @@ package() {
             mv ${pkgdir}/usr/lib/perl/$fname ${pkgdir}/usr/lib/perl/${fname#meme-}
         fi
     done
-    
+
     sed -i -e "s/\(PROG => \)/\1'meme-'./g" "${pkgdir}/usr/bin/meme-meme-chip"
+
+    # get_meme_bin_file in src/utils.c does not deal well with meme- prefixes.
+    # It is being called three times in the source code:
+    # > grep 'get_meme_bin_file' src/meme_4.10.2/src/*.c
+    # src/meme_4.10.2/src/glam2_glam2.c:  glam2html = get_meme_bin_file("glam2html");
+    # src/meme_4.10.2/src/glam2_glam2.c:  glam2psfm = get_meme_bin_file("glam2psfm");
+    # src/meme_4.10.2/src/meme.c:    prog = get_meme_bin_file("meme_xml_to_html");
+    # Add symlinks for those files:
+    ln -s "${pkgdir}/usr/bin/meme-meme_xml_to_html" "${pkgdir}/usr/bin/meme_xml_to_html"
+    ln -s "${pkgdir}/usr/bin/meme-glam2html" "${pkgdir}/usr/bin/glam2html"
+    ln -s "${pkgdir}/usr/bin/meme-glam2psfm" "${pkgdir}/usr/bin/glam2psfm" 
 }