Fix mast_xml_to_html

Fix all the symbolic links

1 files changed, 18 insertions, 6 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 0afd6acb9781..70076ae415d8 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,7 +2,7 @@
 #Contributor: Charles E. Vejnar
 pkgname=meme
 pkgver=4.12.0
-pkgrel=1
+pkgrel=2
 _minor=
 pkgdesc="The MEME suite provides tools for discovering and using protein and DNA sequence motifs"
 arch=("i686" "x86_64")
@@ -15,8 +15,13 @@ sha1sums=('4325c6a558412dac277592b8c0493efbaf07a931')
 build() {
     cd $srcdir/${pkgname}_${pkgver%_*}
 
-    LDFLAGS="-Wl,--allow-multiple-definition" ./configure --prefix=/usr --program-prefix="meme-" --docdir='${prefix}'/usr/share/doc/meme --sysconfdir='${prefix}'/../etc/meme
-
+    export MEME_ETC_DIR="/etc/meme"
+    LDFLAGS="-Wl,--allow-multiple-definition" \
+           ./configure \
+           --prefix=/usr \
+           --program-prefix="meme-" \
+           --docdir='${prefix}'/usr/share/doc/meme \
+           --sysconfdir='${prefix}'/../etc/meme
     make
 }
 
@@ -32,6 +37,11 @@ package() {
         fi
     done
 
+    perl_major=$(perl -e '$^V =~ /^v(\d+)/ and print $1; print "\n"')
+    perl_minor=$(perl -e '$^V =~ /\.(\d+)\./ and print $1; print "\n"')
+    mkdir -p "${pkgdir}/usr/lib/perl${perl_major}/${perl_major}.${perl_minor}"
+    mv "${pkgdir}/usr/lib/perl" "${pkgdir}/usr/lib/perl${perl_major}/${perl_major}.${perl_minor}/vendor_perl"
+
     sed -i -e "s/\(PROG => \)/\1'meme-'./g" "${pkgdir}/usr/bin/meme-meme-chip"
 
     # get_meme_bin_file in src/utils.c does not deal well with meme- prefixes.
@@ -41,7 +51,9 @@ package() {
     # src/meme_4.10.2/src/glam2_glam2.c:  glam2psfm = get_meme_bin_file("glam2psfm");
     # src/meme_4.10.2/src/meme.c:    prog = get_meme_bin_file("meme_xml_to_html");
     # Add symlinks for those files:
-    ln -s "${pkgdir}/usr/bin/meme-meme_xml_to_html" "${pkgdir}/usr/bin/meme_xml_to_html"
-    ln -s "${pkgdir}/usr/bin/meme-glam2html" "${pkgdir}/usr/bin/glam2html"
-    ln -s "${pkgdir}/usr/bin/meme-glam2psfm" "${pkgdir}/usr/bin/glam2psfm"
+    ln -s "meme-meme_xml_to_html" "${pkgdir}/usr/bin/meme_xml_to_html"
+    ln -s "meme-glam2html" "${pkgdir}/usr/bin/glam2html"
+    ln -s "meme-glam2psfm" "${pkgdir}/usr/bin/glam2psfm"
+    ln -s "meme-mast_xml_to_html" "${pkgdir}/usr/bin/mast_xml_to_html"
+    ln -s "meme-mast_xml_to_txt" "${pkgdir}/usr/bin/mast_xml_to_txt"
 }