Initial import

1 files changed, 94 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0d3b1ba449cb
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,94 @@
+# Maintainer: Michael Schubert <mschu.dev at gmail>
+
+pkgname=mgltools
+pkgver=1.5.6
+pkgrel=1
+pkgdesc="Visualization and analysis of molecular structures; includes AutoDockTools, Vision and PythonMoleculeViewer"
+arch=('i686' 'x86_64')
+url="http://mgltools.scripps.edu/"
+license=('custom')
+depends=('swig' 'tk' 'python2-numpy' 'python2-imaging' 'python2-pmw' 'glut' 'zsi' 'python2-simpy' 'libxmu')
+optdepends=('autodocksuite')
+source=("http://mgltools.scripps.edu/downloads/tars/releases/REL${pkgver}/${pkgname}_source_${pkgver}.tar.gz"
+        opengltk.patch)
+options=('!emptydirs')
+md5sums=('e37ceac50fd46bd89abb2ba44a812a65'
+         '357fe047c8edcd89d9cf1b8f7f70d258')
+
+build() {
+  cd "$srcdir/${pkgname}_source_$pkgver"
+  sed -i "1s:python2.5:python2:" InstTools/install
+
+  # replace path by os.path where needed
+  sed -i "s:path.exists:os.path.exists:; \
+    s:os.os.path.exists:os.path.exists:; \
+    s:path.join:os.path.join:; \
+    s:os.os.path.join:os.path.join:" InstTools/install
+
+  # do not install pmw since it is dependecy already
+  sed -i 's:getYesNo(msg, "Do you wish to install Pmw:False #:' InstTools/install
+  # fix include for strcmp in geomutils
+  sed -i "239i\    if (pkgname == \"geomutils\"): os.popen(\"sed -i '3i#include\
+    <string.h>' src/geomAlgorithms/objfile.cpp\")" InstTools/install
+  # fix opengltk to work with tcl/tk 8.5
+  sed -i "240i\    if (pkgname == \"opengltk\"): \
+    os.popen(\"sed -i 's/stub8.4/stub8.5/g' setup.py\")" InstTools/install
+  
+  # disable license popup - we'll print it to the user later
+  cd "$srcdir/${pkgname}_source_$pkgver/MGLPACKS"
+  tar -xzf mglutil-$pkgver.tar.gz
+  rm -f mglutil-$pkgver.tar.gz
+  echo > mglutil-$pkgver/mglutil/splashregister/license.py
+  tar -czf mglutil-$pkgver.tar.gz mglutil-$pkgver
+
+  # fix opengltk error
+  cd "$srcdir/${pkgname}_source_$pkgver/MGLPACKS"
+  tar -xzf opengltk-$pkgver.tar.gz
+  rm -f opengltk-$pkgver.tar.gz
+  patch -p0 < "$srcdir"/opengltk.patch
+  tar -czf opengltk-$pkgver.tar.gz opengltk-$pkgver
+}
+
+package() {
+  cd "$srcdir/${pkgname}_source_$pkgver"
+
+  # let python know about the new modules
+  pydir=`python2 -c "from distutils.sysconfig import get_python_lib; \
+    print get_python_lib()"`
+  mkdir -p "$pkgdir/$pydir"
+  ./startInstallation --quiet --instDir="$pkgdir/$pydir"
+
+  # link to bin directory
+  install -Dm755 "$pkgdir/$pydir/runAdt" "$pkgdir/usr/bin/adt"
+  install -Dm755 "$pkgdir/$pydir/runPmv" "$pkgdir/usr/bin/pmv"
+  install -Dm755 "$pkgdir/$pydir/runCADD" "$pkgdir/usr/bin/CADD"
+  install -Dm755 "$pkgdir/$pydir/runVision" "$pkgdir/usr/bin/vision"
+
+  echo "MGLToolsPckgs" > "$pkgdir/$pydir/mgltools.pth"
+
+  # fix some python 2.7 issues in the package
+  sed -i "/self.__debug__ = 0/d" \
+    "$pkgdir/$pydir/MGLToolsPckgs/ViewerFramework/VF.py"
+
+  # remove VCS entries
+  rm -rf `find "$pkgdir" -type d -name "CVS"`
+
+  # some other fixes..
+  cd "$pkgdir/$pydir/MGLToolsPckgs"
+  rm -f "mglutil/TestUtil/publishPack.csh"
+
+  # change interpreter from python/2.5 to python2
+  find . -name "*.py" | xargs sed -i "1s/python$/python2/;1s/python2.5$/python2/"
+
+  # install licenses
+  for LICENSE in `find . -name LICENSE`; do
+    install -Dm755 "./$LICENSE" "$pkgdir/usr/share/licenses/mgltools/$LICENSE"
+    rm "$LICENSE"
+  done
+  mv *.egg-info "$pkgdir/usr/share/licenses/mgltools/"
+
+  msg "LICENSE WARNING:"
+  msg "This software is free only for non-commercial usage"
+  msg "see /usr/share/licenses/mgltools/ for more information"
+}
+