Initial import

1 files changed, 102 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer:  Alexander Minges <alexander.minges@gmail.de>
+# Contributor: Michael Schubert <mschu.dev at gmail>
+# Contributor: yescalona <yescalona@ug_uchile_cl>
+# Contributor: Juan Miguel Cejuela <jmcejuela@gmail.com>
+# Contributor: Fabio Zanini <iosonofabio@gmail.com>
+
+pkgname=modeller
+pkgver=9.15
+pkgrel=1
+pkgdesc="3D Structure Homology Modeller"
+arch=('i686' 'x86_64')
+url="http://salilab.org/modeller/"
+license=('custom')
+depends=('python2' 'glib2')
+optdepends=('python: python3 support')
+install=modeller.install
+source=("http://www.salilab.org/modeller/$pkgver/modeller-$pkgver.tar.gz")
+
+sha256sums=('9833eace132429abee54f2f7055a55f88ac9990cd79024f95a58d12161ca8eee')
+
+package() {
+    cd $srcdir/$pkgname-$pkgver
+    
+    #set default values:
+    VER="9.15"
+    VERENV="9v15"
+    MOD="MODELLER ${VER}"
+    PROGRAM=mod${VER}
+    MODINSTALL="${pkgdir}/usr/lib/modeller"
+    _MODINSTALL="/usr/lib/modeller"
+
+    if [ "{$CARCH}" = "i686" ]; then
+        # for i686
+        EXECUTABLE_TYPE="i386-intel8"
+    elif [ "${CARCH}" = "x86_64" ]; then
+        # for x86_64
+        EXECUTABLE_TYPE="x86_64-intel8"
+    else
+        error "MODELLER is only available for i386 and x86_64!"
+    fi
+    
+    # Change directory permisssions
+    find . -type d -exec chmod 755 {} \;
+    
+    # Installing Modeller files
+    mkdir -p "${MODINSTALL}"
+    cp -R README INSTALLATION doc examples modlib src "${MODINSTALL}"
+    mkdir -p "${MODINSTALL}/bin"
+    cp -R bin/*.top bin/modslave.py bin/lib bin/${PROGRAM}_${EXECUTABLE_TYPE} \
+        "${MODINSTALL}/bin"
+    mkdir -p "${MODINSTALL}/lib"
+    cp -R lib/${EXECUTABLE_TYPE} "${MODINSTALL}/lib"
+
+    # Creating Modeller startup scripts
+    sed -e "s;EXECUTABLE_TYPE${VERENV}=xxx;EXECUTABLE_TYPE${VERENV}=$EXECUTABLE_TYPE;" \
+        -e "s;MODINSTALL${VERENV}=xxx;MODINSTALL${VERENV}=\"$_MODINSTALL\";" \
+        bin/modscript > "${MODINSTALL}/bin/${PROGRAM}"
+    sed -e "s;@TOPDIR\@;\"$_MODINSTALL\";" \
+        -e "s;@EXETYPE\@;$EXECUTABLE_TYPE;" \
+        bin/modpy.sh.in > "${MODINSTALL}/bin/modpy.sh"
+    chmod a+x "${MODINSTALL}/bin/${PROGRAM}" "${MODINSTALL}/bin/modpy.sh"
+    sed -e "s;/usr/bin/python;/usr/bin/python2;" \
+        bin/modslave.py > "${MODINSTALL}/bin/modslave.py"
+    
+    # Creating simbol link
+    install -d ${pkgdir}/usr/bin/
+    ln -sf ${_MODINSTALL}/bin/mod$pkgver  ${pkgdir}/usr/bin/mod$pkgver
+    ln -sf ${_MODINSTALL}/bin/modpy.sh  ${pkgdir}/usr/bin/modpy.sh
+    ln -sf ${_MODINSTALL}/bin/modslave.py  ${pkgdir}/usr/bin/modslave.py
+
+    # Create config.py is it not exists
+    if [ ! -f "${_MODINSTALL}/modlib/modeller/config.py" ]; then
+        msg "Creating '${_MODINSTALL}/config.py'..."
+        echo "license = 'XXXX'" > "${MODINSTALL}/modlib/modeller/config.py"
+        msg "Done! Add your license code to '${_MODINSTALL}/config.py'."
+    else
+        msg "Found existing config.py. Please check that the license code within this file is correct!"
+    fi
+    
+    # Add modeller libs to ld.so.conf
+    msg "Adding MODELLER to ld.so.conf..."
+    install -d ${pkgdir}/etc/ld.so.conf.d
+    echo "/usr/lib/${pkgname}/lib/${EXECUTABLE_TYPE}" > ${pkgdir}/etc/ld.so.conf.d/${pkgname}.conf
+
+    # Install python2 module
+    msg "Installing package for python2..."
+    install -d ${pkgdir}/usr/lib/python2.7/site-packages
+    ln -s ${_MODINSTALL}/modlib/modeller  ${pkgdir}/usr/lib/python2.7/site-packages/modeller  
+        
+    ln -s ${_MODINSTALL}/lib/${EXECUTABLE_TYPE}/python2.5/_modeller.so ${pkgdir}/usr/lib/python2.7/site-packages/_modeller.so
+     
+     # Install python3 modules if python3 is installed
+     if [ -d "/usr/lib/python3.4/site-packages" ]; then
+         msg "Installing package for python3..."
+         install -d ${pkgdir}/usr/lib/python3.4/site-packages
+         ln -s ${_MODINSTALL}/modlib/modeller  ${pkgdir}/usr/lib/python3.4/site-packages/modeller
+         ln -s ${_MODINSTALL}/lib/${EXECUTABLE_TYPE}/python3.3/_modeller.so ${pkgdir}/usr/lib/python3.4/site-packages/_modeller.so
+     else
+         msg "Python3 not found! If you want to use modeller within python3, install 'python32' from the AUR and reinstall MODELLER."
+     fi
+} 
+