diff options
author | Josh Marshall | 2018-03-29 14:02:09 -0400 |
---|---|---|
committer | Josh Marshall | 2018-03-29 14:02:09 -0400 |
commit | b1f4303ebb250d43b72cf0105db62eccce467c4b (patch) | |
tree | 55729bd7f7a071cbec74130532e2f0ce01c0f5f1 /PKGBUILD | |
download | aur-b1f4303ebb250d43b72cf0105db62eccce467c4b.tar.gz |
First commit. WARNING: this is being added at this time to assist in a bug report, and should be considered non-functional.
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 87 |
1 files changed, 87 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..208a31cdd5b3 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,87 @@ +# Maintainer: Josh Marshall <jrmarsha@mtu.edu> + +pkgname=pfam +pkgver=31.0 +pkgrel=1 +pkgdesc='The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). ' +arch=('any') +license=('CC0') +url='ftp://ftp.ebi.ac.uk' +depends=('hmmer') +makedepends=('bash') +provides=() +path="/pub/databases/Pfam/current_release" +source=( + "$url$path/Pfam-A.clans.tsv.gz" + "$url$path/Pfam-A.dead.gz" + "$url$path/Pfam-A.fasta.gz" + "$url$path/Pfam-A.full.gz" + "$url$path/Pfam-A.full.metagenomics.gz" + "$url$path/Pfam-A.full.ncbi.gz" + "$url$path/Pfam-A.full.uniprot.gz" + "$url$path/Pfam-A.hmm.dat.gz" + "$url$path/Pfam-A.hmm.gz" + "$url$path/Pfam-A.regions.tsv.gz" + "$url$path/Pfam-A.regions.uniprot.tsv.gz" + "$url$path/Pfam-A.rp15.gz" + "$url$path/Pfam-A.rp35.gz" + "$url$path/Pfam-A.rp55.gz" + "$url$path/Pfam-A.rp75.gz" + "$url$path/Pfam-A.seed.gz" + "$url$path/Pfam-C.gz" + "$url$path/Pfam.version.gz" + "$url$path/active_site.dat.gz" + "$url$path/diff.gz" + "$url$path/metaseq.gz" + "$url$path/ncbi.gz" + "$url$path/pdbmap.gz" + "$url$path/pfamseq.gz" + "$url$path/relnotes.txt" + "$url$path/swisspfam.gz" + "$url$path/trees.tgz" + "$url$path/uniprot.gz" + "$url$path/uniprot_reference_proteomes.dat.gz" + "$url$path/uniprot_sprot.dat.gz" + "$url$path/uniprot_trembl.dat.gz" + "$url$path/userman.txt" + ) +md5sums=( +'8951c2a33e7f77c562473097d6ac2b33' #Pfam-A.clans.tsv.gz +'84911a0062127ed317c78cbc914ddf87' #Pfam-A.dead.gz +'118fe71332b219fcd0a3e637f1071daa' #Pfam-A.fasta.gz +'18e8e092530bd5bea65027eafd48071d' #Pfam-A.full.gz +'2aefa6868e6b90e81ee3bc49f5f488d3' #Pfam-A.full.metagenomics.gz +'07addfd349bd1210d669a0943c9d4710' #Pfam-A.full.ncbi.gz +'57b776bf6af21ad2444dc22cc0b5f52b' #Pfam-A.full.uniprot.gz +'ebd972c5d7723213b254b44362fd7ff1' #Pfam-A.hmm.dat.gz +'b6fda5fdc90d24fbc1484d3b641d4e32' #Pfam-A.hmm.gz +'05545e623b17c445e9f4daf35de299a3' #Pfam-A.regions.tsv.gz +'f5a35b1a69cbaf0ea711ab34567a5cbc' #Pfam-A.regions.uniprot.tsv.gz +'18cf5026bf9c582330bb79dc81369fbf' #Pfam-A.rp15.gz +'1ae926383d04bb8bb49c2638742ea692' #Pfam-A.rp35.gz +'55aeeab2ea19da2c80d70e10c7d24e0f' #Pfam-A.rp55.gz +'0b23fa218d00ddcb1905a5c96bb90e98' #Pfam-A.rp75.gz +'769f26046f6cd40e3b98aab20444ad07' #Pfam-A.seed.gz +'f1dd39486bbbd6ec58a4375e5792ebe7' #Pfam-C.gz +'3e47eec766a99b599cb24f28c4d393f8' #Pfam.version.gz +'e3abb05823817e0c7ef77888a5c6906d' #active_site.dat.gz +'1fb93cc2ef9302cb3a77586d7a2cb31c' #diff.gz +'b2d5702cd3d8cfbd91818a0eebf3230d' #metaseq.gz +'3db585e9bbd6b7f8a2dc97c1ff3b14b0' #ncbi.gz +'c255691cd9e8315d7895109cc2e27de7' #pdbmap.gz +'a7361044f6e85355cb75bc2c898cc8c4' #pfamseq.gz +'d763ba0cadbc8d112ea8b160b4d684b2' #relnotes.txt +'cda141456671a58bb320301c0d7e57d8' #swisspfam.gz +'6421632157ebe5c596ff7b03fa4a7c38' #trees.tgz +'d4aa02ea20995d12ef476e5190f5640d' #uniprot.gz +'762a2f475b80a70114a9dffe631842bb' #uniprot_reference_proteomes.dat.gz +'8595d709244198798facb83edffb0ee8' #uniprot_sprot.dat.gz +'c6d85f03c6b7828bc2c9cef7f77fdffd' #uniprot_trembl.dat.gz +'6b5708e27461b2e705a73898be881d5f' #userman.txt +) + +package() { + mkdir -p "$pkgdir/opt/$pkgname/" + rm -f *.gz *.tgz + find * -maxdepth 0 -regex '.+\.gz|.+\.tgz' -prune -o -print0 | xargs -0 -i mv {} "$pkgdir/opt/$pkgname/" +} |