First commit with PKGBUILD and .SRCINFO

1 files changed, 31 insertions, 0 deletions

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+# Maintainer: Clint Valentine <valentine.clint@gmail.com>
+
+pkgname='python-pybedtools'
+pkgver=0.7.10
+pkgrel=1
+pkgdesc="Python wrapper for Aaron Quinlan's bedtools."
+arch=('any')
+url="http://daler.github.io/pybedtools"
+license=('GPL2')
+depends=(
+  'python'
+  'python-numpy'
+  'python-pandas'
+  'python-pysam>=0.8.1'
+  'python-six')
+makedepends=('cython' 'python-setuptools')
+optdepends=(
+  'bedtools: more-or-less required by namesake'
+  'htslib: for working with SAM/BAM/CRAM files'
+  'python-matplotlib: for plotting genomic intervals'
+  'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
+provides=('python-pybedtools')
+conflicts=('python-pybedtools')
+options=(!emptydirs)
+source=("https://github.com/daler/${pkgname//python-/}/archive/v${pkgver}.tar.gz")
+md5sums=('2791d8005a3ce286e597de5adc68a369')
+
+package() {
+  cd "${srcdir}/${pkgname//python-/}-${pkgver}"
+  python setup.py install --root="${pkgdir}/" --optimize=1
+}