add r-affycoretools

1 files changed, 53 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..269cb0215797
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=affycoretools
+_pkgver=1.68.1
+pkgname=r-${_pkgname,,}
+pkgver=1.68.1
+pkgrel=1
+pkgdesc='Functions useful for those doing repetitive analyses with Affymetrix GeneChips'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-affy
+  r-annotationdbi
+  r-biobase
+  r-biocgenerics
+  r-dbi
+  r-edger
+  r-gcrma
+  r-ggplot2
+  r-glimma
+  r-gostats
+  r-gplots
+  r-hwriter
+  r-limma
+  r-oligoclasses
+  r-reportingtools
+  r-rsqlite
+  r-s4vectors
+  r-xtable
+)
+optdepends=(
+  r-affydata
+  r-biocstyle
+  r-hgfocuscdf
+  r-hgu95av2.db
+  r-knitr
+  r-rgl
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9c0f1ab7e121e6655ce831f70b188ec006ff5fc204f3b8c649af5e593c24a617')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: