add r-allelicimbalance

1 files changed, 52 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f6f29f38bf87
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=AllelicImbalance
+_pkgver=1.34.0
+pkgname=r-${_pkgname,,}
+pkgver=1.34.0
+pkgrel=1
+pkgdesc='Investigates Allele Specific Expression'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-biocgenerics
+  r-biostrings
+  r-bsgenome
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicfeatures
+  r-genomicranges
+  r-gridextra
+  r-gviz
+  r-iranges
+  r-latticeextra
+  r-rsamtools
+  r-s4vectors
+  r-seqinr
+  r-summarizedexperiment
+  r-variantannotation
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-org.hs.eg.db
+  r-rmarkdown
+  r-snplocs.hsapiens.dbsnp144.grch37
+  r-testthat
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5fd4b8c0463924f48128dd4e1b5f2ee8410ad57d91e297e15aa7f3f93b689d70')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: