add r-amaretto

1 files changed, 54 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6caa8ad08256
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=AMARETTO
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Apache')
+depends=(
+  r
+  r-biocfilecache
+  r-callr
+  r-circlize
+  r-complexheatmap
+  r-curatedtcgadata
+  r-doparallel
+  r-dplyr
+  r-dt
+  r-foreach
+  r-ggplot2
+  r-glmnet
+  r-gridextra
+  r-httr
+  r-impute
+  r-knitr
+  r-limma
+  r-matrixstats
+  r-multiassayexperiment
+  r-rcpp
+  r-readr
+  r-reshape2
+  r-rmarkdown
+  r-tibble
+)
+optdepends=(
+  r-knitr
+  r-mass
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('bd32789a54abfb240f4204976ce7dbfc15063713a964af278b20a4b452982d84')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: