add r-basics

1 files changed, 54 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..8eefccaad66b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=BASiCS
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='Bayesian Analysis of Single-Cell Sequencing data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-assertthat
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-coda
+  r-cowplot
+  r-ggextra
+  r-ggplot2
+  r-hexbin
+  r-matrixstats
+  r-rcpp
+  r-rcpparmadillo
+  r-reshape2
+  r-s4vectors
+  r-scran
+  r-scuttle
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-viridis
+  gcc
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-magick
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d6c603246c5b3c641d4d5aef0d2d0285ff2e46246fc8ab94880c8bcd7a20e019')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: