upgpkg: r-biocgenerics 0.42.0-1

upstream release

upstream release

1 files changed, 27 insertions, 6 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 5a5ebd987491..fe8a1197c21f 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,19 +1,37 @@
+# Maintainer: peippo <christoph+aur@christophfink.com>
 # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=BiocGenerics
-_bcver=0.40.0
+_bcver=0.42.0
 pkgname=r-${_bcname,,}
 pkgver=${_bcver//[:-]/.}
 pkgrel=1
 pkgdesc="S4 generic functions used in Bioconductor"
 arch=(any)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
-license=(Artistic-2.0)
-depends=('r>=4.0.0')
-optdepends=(r-biobase r-s4vectors r-iranges r-genomicranges r-delayedarray r-biostrings r-rsamtools r-annotationdbi r-affy r-affyplm r-deseq2 r-flowclust r-msnbase r-annotate r-runit)
+license=("Artistic-2.0")
+
+depends=("r>=4.0.0")
+optdepends=(
+    r-biobase
+	r-s4vectors
+	r-iranges
+	r-genomicranges
+	r-delayedarray
+	r-biostrings
+	r-rsamtools
+	r-annotationdbi
+	r-affy
+	r-affyplm
+	r-deseq2
+	r-flowclust
+	r-msnbase
+	r-annotate
+	r-runit
+)
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('d045577f491676583a5faca014af9774d993fffb999fdab3b3790a8732e9255b')
+sha256sums=("0cb6fa74a389693d253a9f61935d335fcfcc1dfe5acbba78b3cc43c1af5d6947")
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
@@ -21,6 +39,9 @@ build() {
 
 package() {
   install -dm0755 "${pkgdir}/usr/lib/R/library"
-
   cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
+
+  if [[ -f "${_cranname}/LICENSE" ]]; then
+    install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+  fi
 }