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| author | BioArchLinuxBot | 2023-06-18 06:04:19 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-06-18 06:04:19 +0000 |
| commit | 0850d9e01804520e59f8b890f9edfd080c6c9d8b (patch) | |
| tree | 5a29885e32ace95cbbb4cd2a48ed7def3d0bcb56 /PKGBUILD | |
| parent | 5ad5825f3cdd31cdaf9dfe25a78baa81d82117a4 (diff) | |
| download | aur-0850d9e01804520e59f8b890f9edfd080c6c9d8b.tar.gz | |
[lilac] updated to 1.8.3-1
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 39 |
1 files changed, 25 insertions, 14 deletions
@@ -1,22 +1,22 @@ -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=BioNERO -_pkgver=1.8.2 +_pkgver=1.8.3 pkgname=r-${_pkgname,,} -pkgver=1.8.2 +pkgver=${_pkgver//[:-]/.} pkgrel=1 -pkgdesc='Biological Network Reconstruction Omnibus' -arch=('any') +pkgdesc="Biological Network Reconstruction Omnibus" +arch=(any) url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +license=(GPL3) depends=( - r r-biocparallel r-complexheatmap r-dynamictreecut r-genie3 + r-ggdendro r-ggnetwork - r-ggnewscale r-ggplot2 r-ggrepel r-igraph @@ -24,31 +24,42 @@ depends=( r-matrixstats r-minet r-netrep - r-networkd3 r-patchwork r-rcolorbrewer r-reshape2 + r-rlang r-summarizedexperiment r-sva r-wgcna ) +checkdepends=( + r-networkd3 + r-testthat +) optdepends=( r-biocstyle r-covr r-deseq2 r-knitr + r-networkd3 r-rmarkdown r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('b2f8342722b79c96e8d143c65e8a5aec9e7d600171f0abde90eb6abc12ddc001') +md5sums=('5a5d4ebb8c7331e7d181b3bb49c70ec0') +sha256sums=('ee4db9277d5a9a063834924dd60c30e620ad3b2fbdcc8672565c52ea89d0d1d8') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |