Version 1.0.1

1 files changed, 51 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..63ad32fa9d8e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=BSgenomeForge
+_pkgver=1.0.1
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Forge BSgenome data packages"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(Artistic2.0)
+depends=(
+  r-biobase
+  r-biocgenerics
+  r-biostrings
+  r-bsgenome
+  r-genomeinfodb
+  r-iranges
+  r-rtracklayer
+  r-s4vectors
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-devtools
+  r-genomicfeatures
+  r-genomicranges
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('630aec996209048e39553239dd20e563')
+sha256sums=('eb1afd85e3a0f97ae842e349e7ec972cd758bbf2a9a13cdde85b5a4a3232a232')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}