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| author | BioArchLinuxBot | 2023-07-21 18:04:37 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-07-21 18:04:37 +0000 |
| commit | 6914328529f50b79b7306bc1955c94fc4a815212 (patch) | |
| tree | a6b7fe9468e41992e2b9ab2d4e526b7232e13032 /PKGBUILD | |
| parent | 5f204e54f626a8b98d1ecc8e01b38c6b595287c7 (diff) | |
| download | aur-6914328529f50b79b7306bc1955c94fc4a815212.tar.gz | |
[lilac] updated to 1.14.1-2
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 45 |
1 files changed, 28 insertions, 17 deletions
@@ -1,20 +1,18 @@ -# system requirements: GNU make -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=BUSpaRse _pkgver=1.14.1 pkgname=r-${_pkgname,,} -pkgver=1.14.1 -pkgrel=1 -pkgdesc='kallisto | bustools R utilities' -arch=('x86_64') +pkgver=${_pkgver//-/.} +pkgrel=2 +pkgdesc="kallisto | bustools R utilities" +arch=(x86_64) url="https://bioconductor.org/packages/${_pkgname}" -license=('BSD') +license=(BSD) depends=( - r r-annotationdbi r-annotationfilter - r-bh r-biocgenerics r-biomart r-biostrings @@ -29,14 +27,19 @@ depends=( r-magrittr r-plyranges r-rcpp - r-rcpparmadillo - r-rcppprogress r-s4vectors r-stringr r-tibble r-tidyr r-zeallot - make +) +makedepends=( + r-bh + r-rcpparmadillo + r-rcppprogress +) +checkdepends=( + r-testthat ) optdepends=( r-biocstyle @@ -49,15 +52,23 @@ optdepends=( r-txdb.hsapiens.ucsc.hg38.knowngene ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('d08b55495020361901d1373d4df4339c') sha256sums=('ee8174afe13d61a5755568cd3f5e354450ac109e321bb5040db8cc35dcfaad8a') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |