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| author | Sukanka | 2022-06-06 05:39:03 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 05:39:03 +0800 |
| commit | f6f67119f8f7c74f7eb8bebe3d72aee07b37cb29 (patch) | |
| tree | 3188d86ff9e30fce55724d0d934db49c651c25c7 /PKGBUILD | |
| download | aur-f6f67119f8f7c74f7eb8bebe3d72aee07b37cb29.tar.gz | |
add r-cager
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 60 |
1 files changed, 60 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..bba8cf1f2911 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,60 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=CAGEr +_pkgver=2.2.0 +pkgname=r-${_pkgname,,} +pkgver=2.2.0 +pkgrel=1 +pkgdesc='Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-biocparallel + r-bsgenome + r-data.table + r-delayedarray + r-delayedmatrixstats + r-formula.tools + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-ggplot2 + r-gtools + r-iranges + r-memoise + r-multiassayexperiment + r-plyr + r-reshape2 + r-rsamtools + r-rtracklayer + r-s4vectors + r-som + r-stringdist + r-stringi + r-summarizedexperiment + r-vegan + r-vgam +) +optdepends=( + r-biocstyle + r-bsgenome.drerio.ucsc.danrer7 + r-deseq2 + r-fantom3and4cage + r-knitr + r-rmarkdown +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('1cd64f6b045a5e246ae92cd709234c806edfcc25463819df0bd32fe4f4b2fd0d') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |