[lilac] updated to 1.38.0-4

1 files changed, 28 insertions, 16 deletions

diff --git a/PKGBUILD b/PKGBUILD
index eb9966d813ef..099298b447d4 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,44 +1,56 @@
-# system requirements: OpenBabel (>= 3.0.0) with headers(http://openbabel.org). Eigen3 with headers.
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=ChemmineOB
 _pkgver=1.38.0
 pkgname=r-${_pkgname,,}
-pkgver=1.38.0
-pkgrel=3
-pkgdesc='R interface to a subset of OpenBabel functionalities'
-arch=('x86_64')
+pkgver=${_pkgver//-/.}
+pkgrel=4
+pkgdesc="R interface to a subset of OpenBabel functionalities"
+arch=(x86_64)
 url="https://bioconductor.org/packages/${_pkgname}"
-license=('custom')
+license=(Artistic2.0 GPL3)
 depends=(
-  r
-  r-bh
+  openbabel
   r-biocgenerics
   r-rcpp
   r-zlibbioc
-  openbabel
+)
+makedepends=(
   eigen
+  r-bh
+)
+checkdepends=(
+  r-chemminer
+  r-runit
 )
 optdepends=(
   r-biocmanager
   r-biocstyle
   r-chemminer
-  r-chemminer
   r-knitr
   r-knitrbootstrap
   r-rmarkdown
   r-runit
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('5d721ca0fa36f8b42fecca0ab4f98910')
 sha256sums=('9115e25d3be94148fcc549b22af107c3fe0055569ac4e36ce161a203a8698450')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
-  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
 }
-# vim:set ts=2 sw=2 et: